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Mutant Information

Mutant Name	FN1488-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1488-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 22280874 C-T Hetero INTERGENIC
SBS Chr1 33778648 T-A Homo INTERGENIC
SBS Chr2 12437306 A-G Homo INTERGENIC
SBS Chr2 24508332 T-C Homo INTERGENIC
SBS Chr2 25891413 G-A Homo INTERGENIC
SBS Chr2 25891415 T-A Homo INTERGENIC
SBS Chr2 27676109 T-C Homo INTRON
SBS Chr2 28366385 C-A Hetero INTERGENIC
SBS Chr3 2191164 T-A Homo SPLICE_SITE_REGION
SBS Chr3 20522902 C-T Homo INTERGENIC
SBS Chr3 26243336 A-T Hetero INTERGENIC
SBS Chr4 1311204 A-G Hetero INTRON
SBS Chr4 29152304 C-T Homo INTERGENIC
SBS Chr5 12300266 C-A Homo INTERGENIC
SBS Chr5 17212084 C-A Homo UTR_3_PRIME
SBS Chr6 13673315 C-T Hetero INTERGENIC
SBS Chr7 2048581 G-T Hetero INTERGENIC
SBS Chr7 13051752 G-A Hetero INTERGENIC
SBS Chr7 13454192 G-A Hetero INTERGENIC
SBS Chr7 19315168 C-T Homo INTRON
SBS Chr8 13960030 G-T Homo INTRON
SBS Chr8 13960031 A-T Homo INTRON
SBS Chr9 3552978 A-G Hetero INTERGENIC
SBS Chr9 20031357 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g167500
SBS Chr10 2077943 A-T Hetero INTERGENIC
SBS Chr10 12035406 G-T Hetero INTERGENIC
SBS Chr11 4325337 G-A Hetero INTERGENIC
SBS Chr11 26758273 C-T Homo INTERGENIC
SBS Chr12 6216851 G-C Hetero INTERGENIC
SBS Chr12 20787742 A-G Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 201379 201387 8
Deletion Chr11 3785962 3785986 24
Deletion Chr4 4962314 4962322 8
Deletion Chr12 7759456 7759457 1
Deletion Chr12 8134022 8134023 1
Deletion Chr7 8683538 8683539 1
Deletion Chr5 12386644 12386645 1
Deletion Chr7 14170790 14170792 2
Deletion Chr7 15589811 15589813 2
Deletion Chr7 16145612 16145614 2
Deletion Chr11 16651743 16651745 2
Deletion Chr3 20413392 20413396 4
Deletion Chr12 23764359 23764361 2
Deletion Chr11 24342192 24342230 38
Deletion Chr11 27094485 27094486 1
Deletion Chr11 27291309 27291310 1
Deletion Chr2 27792196 27792198 2
Deletion Chr2 28253880 28253882 2
Deletion Chr2 29197022 29197024 2
Deletion Chr2 33586418 33586419 1 OsKitaake02g347300
Deletion Chr1 36023001 36050000 26999 2
Deletion Chr1 40537555 40537558 3

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 4330008 4330013 4
Insertion Chr1 22704563 22704566 2
Insertion Chr1 41559537 41559541 3
Insertion Chr7 21976534 21976542 7

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 36417640 37013947
Inversion Chr1 36417661 37013950

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 2355490 Chr2 11859586 OsKitaake03g033600
Translocation Chr3 2356647 Chr2 11859608 OsKitaake03g033600
Translocation Chr3 15573560 Chr1 27363843
Translocation Chr3 15573569 Chr1 27363260

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22280874	C-T	Hetero	INTERGENIC
SBS	Chr1	33778648	T-A	Homo	INTERGENIC
SBS	Chr2	12437306	A-G	Homo	INTERGENIC
SBS	Chr2	24508332	T-C	Homo	INTERGENIC
SBS	Chr2	25891413	G-A	Homo	INTERGENIC
SBS	Chr2	25891415	T-A	Homo	INTERGENIC
SBS	Chr2	27676109	T-C	Homo	INTRON
SBS	Chr2	28366385	C-A	Hetero	INTERGENIC
SBS	Chr3	2191164	T-A	Homo	SPLICE_SITE_REGION
SBS	Chr3	20522902	C-T	Homo	INTERGENIC
SBS	Chr3	26243336	A-T	Hetero	INTERGENIC
SBS	Chr4	1311204	A-G	Hetero	INTRON
SBS	Chr4	29152304	C-T	Homo	INTERGENIC
SBS	Chr5	12300266	C-A	Homo	INTERGENIC
SBS	Chr5	17212084	C-A	Homo	UTR_3_PRIME
SBS	Chr6	13673315	C-T	Hetero	INTERGENIC
SBS	Chr7	2048581	G-T	Hetero	INTERGENIC
SBS	Chr7	13051752	G-A	Hetero	INTERGENIC
SBS	Chr7	13454192	G-A	Hetero	INTERGENIC
SBS	Chr7	19315168	C-T	Homo	INTRON
SBS	Chr8	13960030	G-T	Homo	INTRON
SBS	Chr8	13960031	A-T	Homo	INTRON
SBS	Chr9	3552978	A-G	Hetero	INTERGENIC
SBS	Chr9	20031357	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g167500
SBS	Chr10	2077943	A-T	Hetero	INTERGENIC
SBS	Chr10	12035406	G-T	Hetero	INTERGENIC
SBS	Chr11	4325337	G-A	Hetero	INTERGENIC
SBS	Chr11	26758273	C-T	Homo	INTERGENIC
SBS	Chr12	6216851	G-C	Hetero	INTERGENIC
SBS	Chr12	20787742	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	201379	201387	8
Deletion	Chr11	3785962	3785986	24
Deletion	Chr4	4962314	4962322	8
Deletion	Chr12	7759456	7759457	1
Deletion	Chr12	8134022	8134023	1
Deletion	Chr7	8683538	8683539	1
Deletion	Chr5	12386644	12386645	1
Deletion	Chr7	14170790	14170792	2
Deletion	Chr7	15589811	15589813	2
Deletion	Chr7	16145612	16145614	2
Deletion	Chr11	16651743	16651745	2
Deletion	Chr3	20413392	20413396	4
Deletion	Chr12	23764359	23764361	2
Deletion	Chr11	24342192	24342230	38
Deletion	Chr11	27094485	27094486	1
Deletion	Chr11	27291309	27291310	1
Deletion	Chr2	27792196	27792198	2
Deletion	Chr2	28253880	28253882	2
Deletion	Chr2	29197022	29197024	2
Deletion	Chr2	33586418	33586419	1	OsKitaake02g347300
Deletion	Chr1	36023001	36050000	26999	2
Deletion	Chr1	40537555	40537558	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	36417640	37013947
Inversion	Chr1	36417661	37013950

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes