Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN1490-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1490-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 24
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 11842988 | C-T | Homo | INTRON | |
| SBS | Chr1 | 28251052 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 42248680 | A-T | Homo | INTRON | |
| SBS | Chr2 | 2690110 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g038700 |
| SBS | Chr2 | 23473961 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 3116601 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 29138032 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 15356601 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr4 | 33663627 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 14408989 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 26588484 | C-A | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 10010564 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 20326230 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 8475502 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 4579809 | A-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 18291848 | G-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr10 | 22449762 | A-C | Homo | INTERGENIC | |
| SBS | Chr11 | 4820176 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 8194044 | T-G | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 11960885 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 20170841 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 2183335 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 13784870 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 15166923 | C-T | Hetero | INTERGENIC |
Deletions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 1352005 | 1352006 | 1 | |
| Deletion | Chr5 | 1367001 | 1382000 | 14999 | OsKitaake05g017100 |
| Deletion | Chr1 | 8159135 | 8159136 | 1 | |
| Deletion | Chr6 | 12300411 | 12300413 | 2 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 29025531 | 29025533 | 1 | |
| Insertion | Chr12 | 11713778 | 11713780 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 3562769 | 4215293 | OsKitaake06g058400 |
| Inversion | Chr6 | 3562774 | 4215300 | OsKitaake06g058400 |
| Inversion | Chr7 | 9976300 | 10420173 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 10358662 | Chr7 | 10426272 | |
| Translocation | Chr7 | 10420180 | Chr6 | 17710345 |