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Mutant Information

Mutant Name	FN1492-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1492-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1407821 A-G Homo INTERGENIC
SBS Chr1 6550823 G-C Homo NON_SYNONYMOUS_CODING OsKitaake01g082700
SBS Chr1 16113507 T-G Homo INTERGENIC
SBS Chr1 22051549 G-C Hetero INTERGENIC
SBS Chr1 22106755 G-A Hetero INTERGENIC
SBS Chr2 2861492 G-A Hetero INTRON
SBS Chr2 6674102 T-C Hetero INTERGENIC
SBS Chr3 4286855 G-A Hetero INTERGENIC
SBS Chr3 15634415 T-A Homo INTERGENIC
SBS Chr3 23435354 C-T Homo INTERGENIC
SBS Chr3 29596339 G-A Hetero INTERGENIC
SBS Chr3 29959710 A-G Hetero INTERGENIC
SBS Chr3 34195643 G-C Homo INTERGENIC
SBS Chr4 1808634 C-T Homo INTERGENIC
SBS Chr4 13705176 C-G Hetero INTERGENIC
SBS Chr4 19270239 T-C Hetero INTERGENIC
SBS Chr4 28280374 C-T Hetero INTERGENIC
SBS Chr6 7411513 A-G Hetero INTERGENIC
SBS Chr6 9507060 T-A Hetero SYNONYMOUS_CODING
SBS Chr6 27252676 C-T Hetero INTERGENIC
SBS Chr6 29147767 A-C Hetero INTERGENIC
SBS Chr6 30694665 C-A Homo NON_SYNONYMOUS_CODING OsKitaake06g289900
SBS Chr7 1500526 C-T Hetero INTERGENIC
SBS Chr7 8021252 T-C Hetero INTERGENIC
SBS Chr7 18886990 G-A Hetero INTERGENIC
SBS Chr8 254922 G-A Homo NON_SYNONYMOUS_CODING OsKitaake08g003500
SBS Chr8 1276107 C-T Homo INTERGENIC
SBS Chr8 11677074 T-G Homo INTERGENIC
SBS Chr8 17981379 A-T Homo INTERGENIC
SBS Chr8 27897144 T-C Homo INTRON
SBS Chr9 3176425 G-A Hetero INTERGENIC
SBS Chr9 4017730 C-G Hetero INTERGENIC
SBS Chr9 10149887 A-C Hetero INTERGENIC
SBS Chr9 16588066 G-A Homo INTERGENIC
SBS Chr10 1088124 C-T Hetero INTERGENIC
SBS Chr10 4428744 C-A Hetero INTERGENIC
SBS Chr10 9920426 G-A Hetero INTERGENIC
SBS Chr10 20356878 T-C Hetero INTERGENIC
SBS Chr11 3990171 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g054600
SBS Chr11 9423577 C-T Hetero INTERGENIC
SBS Chr11 11731947 G-C Hetero INTERGENIC
SBS Chr12 8408161 A-G Homo INTERGENIC
SBS Chr12 12614329 T-C Homo INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 6616376 6616391 15
Deletion Chr4 8221637 8221986 349 OsKitaake04g042800
Deletion Chr10 10338590 10338712 122
Deletion Chr6 17087051 17087052 1
Deletion Chr11 19534635 19534651 16 OsKitaake11g152100
Deletion Chr11 19972944 19972955 11
Deletion Chr6 27920001 27932000 11999 OsKitaake06g253400
Deletion Chr1 30803892 30803894 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 31371061 31371064 2
Insertion Chr4 1413243 1413246 2
Insertion Chr7 18127843 18127846 2
Insertion Chr7 18906329 18906332 2
Insertion Chr9 5713105 5713108 2
Insertion Chr12 19120522 19120525 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 4599918 5469692 2
Inversion Chr1 5171007 5530398 OsKitaake01g071200
Inversion Chr1 5171015 5530422 OsKitaake01g071200
Inversion Chr6 7248408 7401362 OsKitaake06g095900
Inversion Chr10 20176066 20712889
Inversion Chr8 22592971 23121042 OsKitaake08g177400

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 7248180 Chr4 32998842 OsKitaake04g267400
Translocation Chr6 7248191 Chr3 36193661
Translocation Chr6 7248405 Chr3 36193684
Translocation Chr6 7401354 Chr4 32984871 2
Translocation Chr9 7868784 Chr4 31804699 OsKitaake09g044700
Translocation Chr6 19484792 Chr2 9340725 OsKitaake02g116000
Translocation Chr6 19485317 Chr2 9340704 OsKitaake02g116000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1407821	A-G	Homo	INTERGENIC
SBS	Chr1	6550823	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g082700
SBS	Chr1	16113507	T-G	Homo	INTERGENIC
SBS	Chr1	22051549	G-C	Hetero	INTERGENIC
SBS	Chr1	22106755	G-A	Hetero	INTERGENIC
SBS	Chr2	2861492	G-A	Hetero	INTRON
SBS	Chr2	6674102	T-C	Hetero	INTERGENIC
SBS	Chr3	4286855	G-A	Hetero	INTERGENIC
SBS	Chr3	15634415	T-A	Homo	INTERGENIC
SBS	Chr3	23435354	C-T	Homo	INTERGENIC
SBS	Chr3	29596339	G-A	Hetero	INTERGENIC
SBS	Chr3	29959710	A-G	Hetero	INTERGENIC
SBS	Chr3	34195643	G-C	Homo	INTERGENIC
SBS	Chr4	1808634	C-T	Homo	INTERGENIC
SBS	Chr4	13705176	C-G	Hetero	INTERGENIC
SBS	Chr4	19270239	T-C	Hetero	INTERGENIC
SBS	Chr4	28280374	C-T	Hetero	INTERGENIC
SBS	Chr6	7411513	A-G	Hetero	INTERGENIC
SBS	Chr6	9507060	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	27252676	C-T	Hetero	INTERGENIC
SBS	Chr6	29147767	A-C	Hetero	INTERGENIC
SBS	Chr6	30694665	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g289900
SBS	Chr7	1500526	C-T	Hetero	INTERGENIC
SBS	Chr7	8021252	T-C	Hetero	INTERGENIC
SBS	Chr7	18886990	G-A	Hetero	INTERGENIC
SBS	Chr8	254922	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g003500
SBS	Chr8	1276107	C-T	Homo	INTERGENIC
SBS	Chr8	11677074	T-G	Homo	INTERGENIC
SBS	Chr8	17981379	A-T	Homo	INTERGENIC
SBS	Chr8	27897144	T-C	Homo	INTRON
SBS	Chr9	3176425	G-A	Hetero	INTERGENIC
SBS	Chr9	4017730	C-G	Hetero	INTERGENIC
SBS	Chr9	10149887	A-C	Hetero	INTERGENIC
SBS	Chr9	16588066	G-A	Homo	INTERGENIC
SBS	Chr10	1088124	C-T	Hetero	INTERGENIC
SBS	Chr10	4428744	C-A	Hetero	INTERGENIC
SBS	Chr10	9920426	G-A	Hetero	INTERGENIC
SBS	Chr10	20356878	T-C	Hetero	INTERGENIC
SBS	Chr11	3990171	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g054600
SBS	Chr11	9423577	C-T	Hetero	INTERGENIC
SBS	Chr11	11731947	G-C	Hetero	INTERGENIC
SBS	Chr12	8408161	A-G	Homo	INTERGENIC
SBS	Chr12	12614329	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	6616376	6616391	15
Deletion	Chr4	8221637	8221986	349	OsKitaake04g042800
Deletion	Chr10	10338590	10338712	122
Deletion	Chr6	17087051	17087052	1
Deletion	Chr11	19534635	19534651	16	OsKitaake11g152100
Deletion	Chr11	19972944	19972955	11
Deletion	Chr6	27920001	27932000	11999	OsKitaake06g253400
Deletion	Chr1	30803892	30803894	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	4599918	5469692	2
Inversion	Chr1	5171007	5530398	OsKitaake01g071200
Inversion	Chr1	5171015	5530422	OsKitaake01g071200
Inversion	Chr6	7248408	7401362	OsKitaake06g095900
Inversion	Chr10	20176066	20712889
Inversion	Chr8	22592971	23121042	OsKitaake08g177400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes