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Mutant Information

Mutant Name	FN1493-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1493-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13943853 G-T Hetero INTERGENIC
SBS Chr1 19160633 G-A Hetero INTERGENIC
SBS Chr1 19160635 T-A Hetero INTERGENIC
SBS Chr1 20675625 C-T Hetero UTR_3_PRIME
SBS Chr2 12629479 A-G Hetero INTERGENIC
SBS Chr2 13406195 G-A Hetero INTERGENIC
SBS Chr2 14526725 A-C Hetero INTERGENIC
SBS Chr2 16015187 A-T Hetero INTRON
SBS Chr3 15968734 C-T Hetero INTERGENIC
SBS Chr3 21759353 C-T Homo INTERGENIC
SBS Chr3 24379601 G-A Homo INTERGENIC
SBS Chr3 30576357 A-T Homo NON_SYNONYMOUS_CODING OsKitaake03g321200
SBS Chr4 24314599 T-A Hetero INTERGENIC
SBS Chr4 24314607 G-A Hetero INTERGENIC
SBS Chr5 3602570 G-T Homo INTRON
SBS Chr5 11315154 T-A Hetero INTERGENIC
SBS Chr5 14439840 T-A Hetero INTERGENIC
SBS Chr5 17218534 T-A Hetero INTERGENIC
SBS Chr5 20261296 C-T Hetero INTERGENIC
SBS Chr5 21999354 A-T Hetero INTERGENIC
SBS Chr6 3365934 G-A Hetero INTERGENIC
SBS Chr6 14417622 C-A Hetero INTERGENIC
SBS Chr6 16565062 A-T Hetero INTERGENIC
SBS Chr6 17508491 A-G Hetero INTERGENIC
SBS Chr7 14897579 G-A Hetero INTERGENIC
SBS Chr8 4578878 G-A Homo NON_SYNONYMOUS_CODING OsKitaake08g051750
SBS Chr8 27847021 G-A Hetero INTRON
SBS Chr9 5399641 G-T Homo INTRON
SBS Chr9 14459657 G-A Homo INTERGENIC
SBS Chr9 20735702 T-A Hetero INTERGENIC
SBS Chr11 6726395 C-T Homo INTERGENIC
SBS Chr11 23468274 A-G Homo NON_SYNONYMOUS_CODING OsKitaake11g187200
SBS Chr12 2100181 G-A Hetero INTERGENIC
SBS Chr12 4169470 A-T Hetero INTRON
SBS Chr12 7118802 A-G Hetero INTERGENIC
SBS Chr12 9860332 G-T Homo INTERGENIC
SBS Chr12 19620447 T-C Hetero INTERGENIC
SBS Chr12 25732446 G-A Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 341809 341817 8
Deletion Chr9 728429 728496 67
Deletion Chr5 3599627 3599628 1
Deletion Chr1 4804001 4815000 10999 2
Deletion Chr3 6936292 6936295 3
Deletion Chr4 8664779 8664780 1
Deletion Chr10 10622810 10622811 1
Deletion Chr2 11682007 11682009 2
Deletion Chr12 12708283 12708293 10
Deletion Chr7 12991964 12992031 67
Deletion Chr8 14716001 14784000 67999
Deletion Chr5 16047249 16047250 1
Deletion Chr4 21662477 21662478 1
Deletion Chr2 23190316 23190319 3
Deletion Chr12 24635743 24635750 7 OsKitaake12g199900
Deletion Chr12 24636288 24636296 8
Deletion Chr11 29598387 29598389 2
Deletion Chr2 30434001 30632000 197999 36

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 8577922 8577924 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 21136503 21306358 2
Inversion Chr9 21136525 21306368 2

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr2 10154236 Chr1 31627005 OsKitaake01g317800
Translocation Chr8 15244215 Chr4 24154252 2
Translocation Chr8 15244241 Chr4 24147182 2
Translocation Chr4 24154760 Chr2 10153585
Translocation Chr4 24155008 Chr1 31627006 OsKitaake01g317800
Translocation Chr4 24157127 Chr1 31627003 OsKitaake01g317800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13943853	G-T	Hetero	INTERGENIC
SBS	Chr1	19160633	G-A	Hetero	INTERGENIC
SBS	Chr1	19160635	T-A	Hetero	INTERGENIC
SBS	Chr1	20675625	C-T	Hetero	UTR_3_PRIME
SBS	Chr2	12629479	A-G	Hetero	INTERGENIC
SBS	Chr2	13406195	G-A	Hetero	INTERGENIC
SBS	Chr2	14526725	A-C	Hetero	INTERGENIC
SBS	Chr2	16015187	A-T	Hetero	INTRON
SBS	Chr3	15968734	C-T	Hetero	INTERGENIC
SBS	Chr3	21759353	C-T	Homo	INTERGENIC
SBS	Chr3	24379601	G-A	Homo	INTERGENIC
SBS	Chr3	30576357	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g321200
SBS	Chr4	24314599	T-A	Hetero	INTERGENIC
SBS	Chr4	24314607	G-A	Hetero	INTERGENIC
SBS	Chr5	3602570	G-T	Homo	INTRON
SBS	Chr5	11315154	T-A	Hetero	INTERGENIC
SBS	Chr5	14439840	T-A	Hetero	INTERGENIC
SBS	Chr5	17218534	T-A	Hetero	INTERGENIC
SBS	Chr5	20261296	C-T	Hetero	INTERGENIC
SBS	Chr5	21999354	A-T	Hetero	INTERGENIC
SBS	Chr6	3365934	G-A	Hetero	INTERGENIC
SBS	Chr6	14417622	C-A	Hetero	INTERGENIC
SBS	Chr6	16565062	A-T	Hetero	INTERGENIC
SBS	Chr6	17508491	A-G	Hetero	INTERGENIC
SBS	Chr7	14897579	G-A	Hetero	INTERGENIC
SBS	Chr8	4578878	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g051750
SBS	Chr8	27847021	G-A	Hetero	INTRON
SBS	Chr9	5399641	G-T	Homo	INTRON
SBS	Chr9	14459657	G-A	Homo	INTERGENIC
SBS	Chr9	20735702	T-A	Hetero	INTERGENIC
SBS	Chr11	6726395	C-T	Homo	INTERGENIC
SBS	Chr11	23468274	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g187200
SBS	Chr12	2100181	G-A	Hetero	INTERGENIC
SBS	Chr12	4169470	A-T	Hetero	INTRON
SBS	Chr12	7118802	A-G	Hetero	INTERGENIC
SBS	Chr12	9860332	G-T	Homo	INTERGENIC
SBS	Chr12	19620447	T-C	Hetero	INTERGENIC
SBS	Chr12	25732446	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	341809	341817	8
Deletion	Chr9	728429	728496	67
Deletion	Chr5	3599627	3599628	1
Deletion	Chr1	4804001	4815000	10999	2
Deletion	Chr3	6936292	6936295	3
Deletion	Chr4	8664779	8664780	1
Deletion	Chr10	10622810	10622811	1
Deletion	Chr2	11682007	11682009	2
Deletion	Chr12	12708283	12708293	10
Deletion	Chr7	12991964	12992031	67
Deletion	Chr8	14716001	14784000	67999
Deletion	Chr5	16047249	16047250	1
Deletion	Chr4	21662477	21662478	1
Deletion	Chr2	23190316	23190319	3
Deletion	Chr12	24635743	24635750	7	OsKitaake12g199900
Deletion	Chr12	24636288	24636296	8
Deletion	Chr11	29598387	29598389	2
Deletion	Chr2	30434001	30632000	197999	36

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	21136503	21306358	2
Inversion	Chr9	21136525	21306368	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes