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Mutant Information

Mutant Name	FN1494-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1494-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15752337 G-C Hetero INTERGENIC
SBS Chr1 16267211 T-C Hetero INTERGENIC
SBS Chr1 35190534 C-A Homo INTERGENIC
SBS Chr1 35190535 C-A Homo INTERGENIC
SBS Chr2 33205368 G-A Homo NON_SYNONYMOUS_CODING OsKitaake02g341400
SBS Chr2 33836393 G-A Hetero INTERGENIC
SBS Chr2 34906956 G-A Hetero INTERGENIC
SBS Chr2 34965448 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g365100
SBS Chr2 35933935 T-A Hetero INTERGENIC
SBS Chr3 2990543 G-A Homo INTERGENIC
SBS Chr3 26925455 C-T Homo INTERGENIC
SBS Chr4 6417573 A-G Homo INTERGENIC
SBS Chr4 18875882 G-T Homo INTERGENIC
SBS Chr4 18875883 A-T Homo INTERGENIC
SBS Chr4 26466891 G-A Hetero INTERGENIC
SBS Chr4 32149994 G-A Homo INTERGENIC
SBS Chr7 673318 T-G Hetero INTERGENIC
SBS Chr7 6337430 T-C Hetero INTERGENIC
SBS Chr7 9962630 A-G Hetero INTRON
SBS Chr7 14108985 A-T Hetero UTR_3_PRIME
SBS Chr7 14108986 G-T Hetero UTR_3_PRIME
SBS Chr7 14982567 C-A Hetero INTERGENIC
SBS Chr8 15904529 A-G Hetero INTRON
SBS Chr8 15904819 A-T Hetero INTRON
SBS Chr10 13626734 C-T Homo INTERGENIC
SBS Chr11 25284184 A-C Homo INTERGENIC
SBS Chr12 23007352 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g182800

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 11588480 11588482 2
Deletion Chr2 17734083 17734085 2
Deletion Chr10 19372001 19389000 16999 2
Deletion Chr7 21560052 21560054 2 OsKitaake07g180100
Deletion Chr1 23256001 23271000 14999 OsKitaake01g222400
Deletion Chr5 25875751 25875756 5 OsKitaake05g228400
Deletion Chr3 28577001 28594000 16999 OsKitaake03g296500
Deletion Chr5 30208052 30208406 354

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 31485408 31485411 2
Insertion Chr4 34735289 34735292 2
Insertion Chr7 28907917 28907920 2
Insertion Chr12 16216835 16216838 2
Insertion Chr3 20028375 20028377 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 4355196 5043844 OsKitaake06g067600
Inversion Chr6 4355210 5043882 OsKitaake06g067600
Inversion Chr6 10584543 10606578 2

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 8214031 Chr6 10606518 2
Translocation Chr9 8215154 Chr8 2919066 2
Translocation Chr11 29298045 Chr9 8215177 OsKitaake09g046400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15752337	G-C	Hetero	INTERGENIC
SBS	Chr1	16267211	T-C	Hetero	INTERGENIC
SBS	Chr1	35190534	C-A	Homo	INTERGENIC
SBS	Chr1	35190535	C-A	Homo	INTERGENIC
SBS	Chr2	33205368	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g341400
SBS	Chr2	33836393	G-A	Hetero	INTERGENIC
SBS	Chr2	34906956	G-A	Hetero	INTERGENIC
SBS	Chr2	34965448	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g365100
SBS	Chr2	35933935	T-A	Hetero	INTERGENIC
SBS	Chr3	2990543	G-A	Homo	INTERGENIC
SBS	Chr3	26925455	C-T	Homo	INTERGENIC
SBS	Chr4	6417573	A-G	Homo	INTERGENIC
SBS	Chr4	18875882	G-T	Homo	INTERGENIC
SBS	Chr4	18875883	A-T	Homo	INTERGENIC
SBS	Chr4	26466891	G-A	Hetero	INTERGENIC
SBS	Chr4	32149994	G-A	Homo	INTERGENIC
SBS	Chr7	673318	T-G	Hetero	INTERGENIC
SBS	Chr7	6337430	T-C	Hetero	INTERGENIC
SBS	Chr7	9962630	A-G	Hetero	INTRON
SBS	Chr7	14108985	A-T	Hetero	UTR_3_PRIME
SBS	Chr7	14108986	G-T	Hetero	UTR_3_PRIME
SBS	Chr7	14982567	C-A	Hetero	INTERGENIC
SBS	Chr8	15904529	A-G	Hetero	INTRON
SBS	Chr8	15904819	A-T	Hetero	INTRON
SBS	Chr10	13626734	C-T	Homo	INTERGENIC
SBS	Chr11	25284184	A-C	Homo	INTERGENIC
SBS	Chr12	23007352	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g182800

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	11588480	11588482	2
Deletion	Chr2	17734083	17734085	2
Deletion	Chr10	19372001	19389000	16999	2
Deletion	Chr7	21560052	21560054	2	OsKitaake07g180100
Deletion	Chr1	23256001	23271000	14999	OsKitaake01g222400
Deletion	Chr5	25875751	25875756	5	OsKitaake05g228400
Deletion	Chr3	28577001	28594000	16999	OsKitaake03g296500
Deletion	Chr5	30208052	30208406	354

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	4355196	5043844	OsKitaake06g067600
Inversion	Chr6	4355210	5043882	OsKitaake06g067600
Inversion	Chr6	10584543	10606578	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes