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Mutant Information

Mutant Name	FN1497-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1497-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 32579945 G-A Hetero INTERGENIC
SBS Chr2 4033708 T-A Homo INTERGENIC
SBS Chr2 6287845 C-T Homo NON_SYNONYMOUS_CODING OsKitaake02g085000
SBS Chr2 6804058 G-T Hetero INTERGENIC
SBS Chr2 26668048 T-G Hetero INTRON
SBS Chr2 30742560 T-A Hetero INTRON
SBS Chr3 9360123 G-A Hetero INTERGENIC
SBS Chr3 26606776 C-T Homo INTERGENIC
SBS Chr3 30438106 G-T Hetero INTERGENIC
SBS Chr4 2056574 G-A Hetero INTERGENIC
SBS Chr4 6553129 T-C Hetero INTERGENIC
SBS Chr5 4815525 T-A Hetero INTERGENIC
SBS Chr5 6094060 A-C Hetero INTRON
SBS Chr5 14764175 G-A Homo NON_SYNONYMOUS_CODING OsKitaake05g112500
SBS Chr5 29833137 C-T Hetero INTERGENIC
SBS Chr5 29873890 A-T Hetero INTERGENIC
SBS Chr7 6677817 T-C Homo UTR_3_PRIME
SBS Chr7 11120431 G-A Homo INTERGENIC
SBS Chr7 22574054 C-T Hetero SYNONYMOUS_STOP
SBS Chr7 28811350 C-T Hetero INTERGENIC
SBS Chr8 9141839 C-T Hetero INTRON
SBS Chr8 28712544 C-T Hetero INTERGENIC
SBS Chr10 3953868 C-T Hetero INTERGENIC
SBS Chr11 5464563 A-T Hetero UTR_5_PRIME
SBS Chr11 9240460 C-T Hetero INTERGENIC
SBS Chr11 17186744 C-T Hetero SPLICE_SITE_REGION
SBS Chr11 22731332 G-T Homo INTERGENIC
SBS Chr12 2365017 G-A Hetero INTERGENIC
SBS Chr12 2814362 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g042200
SBS Chr12 12886813 G-T Homo INTERGENIC
SBS Chr12 15301019 C-T Homo INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 624737 624739 2
Deletion Chr9 3723436 3723442 6
Deletion Chr10 5289192 5289195 3
Deletion Chr5 6276050 6276058 8
Deletion Chr2 8234857 8234858 1
Deletion Chr2 9820660 9820678 18
Deletion Chr7 10236001 10379000 142999 8
Deletion Chr5 11757913 11757914 1
Deletion Chr6 13025115 13025119 4
Deletion Chr3 13430534 13430538 4
Deletion Chr12 13763889 13763911 22
Deletion Chr8 13924848 13924849 1
Deletion Chr2 18831387 18831399 12
Deletion Chr12 19430816 19430829 13
Deletion Chr11 20717768 20717773 5
Deletion Chr7 22583262 22583266 4
Deletion Chr12 23033379 23033380 1
Deletion Chr1 24950862 24950864 2
Deletion Chr2 25057569 25057571 2
Deletion Chr3 29401008 29401009 1
Deletion Chr2 30743688 30743689 1
Deletion Chr2 30754637 30754646 9

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 785364 785367 2
Insertion Chr12 17238951 17238954 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 112932 Chr11 430071 OsKitaake12g001100
Translocation Chr12 112941 Chr11 442075 OsKitaake12g001100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	32579945	G-A	Hetero	INTERGENIC
SBS	Chr2	4033708	T-A	Homo	INTERGENIC
SBS	Chr2	6287845	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g085000
SBS	Chr2	6804058	G-T	Hetero	INTERGENIC
SBS	Chr2	26668048	T-G	Hetero	INTRON
SBS	Chr2	30742560	T-A	Hetero	INTRON
SBS	Chr3	9360123	G-A	Hetero	INTERGENIC
SBS	Chr3	26606776	C-T	Homo	INTERGENIC
SBS	Chr3	30438106	G-T	Hetero	INTERGENIC
SBS	Chr4	2056574	G-A	Hetero	INTERGENIC
SBS	Chr4	6553129	T-C	Hetero	INTERGENIC
SBS	Chr5	4815525	T-A	Hetero	INTERGENIC
SBS	Chr5	6094060	A-C	Hetero	INTRON
SBS	Chr5	14764175	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g112500
SBS	Chr5	29833137	C-T	Hetero	INTERGENIC
SBS	Chr5	29873890	A-T	Hetero	INTERGENIC
SBS	Chr7	6677817	T-C	Homo	UTR_3_PRIME
SBS	Chr7	11120431	G-A	Homo	INTERGENIC
SBS	Chr7	22574054	C-T	Hetero	SYNONYMOUS_STOP
SBS	Chr7	28811350	C-T	Hetero	INTERGENIC
SBS	Chr8	9141839	C-T	Hetero	INTRON
SBS	Chr8	28712544	C-T	Hetero	INTERGENIC
SBS	Chr10	3953868	C-T	Hetero	INTERGENIC
SBS	Chr11	5464563	A-T	Hetero	UTR_5_PRIME
SBS	Chr11	9240460	C-T	Hetero	INTERGENIC
SBS	Chr11	17186744	C-T	Hetero	SPLICE_SITE_REGION
SBS	Chr11	22731332	G-T	Homo	INTERGENIC
SBS	Chr12	2365017	G-A	Hetero	INTERGENIC
SBS	Chr12	2814362	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g042200
SBS	Chr12	12886813	G-T	Homo	INTERGENIC
SBS	Chr12	15301019	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	624737	624739	2
Deletion	Chr9	3723436	3723442	6
Deletion	Chr10	5289192	5289195	3
Deletion	Chr5	6276050	6276058	8
Deletion	Chr2	8234857	8234858	1
Deletion	Chr2	9820660	9820678	18
Deletion	Chr7	10236001	10379000	142999	8
Deletion	Chr5	11757913	11757914	1
Deletion	Chr6	13025115	13025119	4
Deletion	Chr3	13430534	13430538	4
Deletion	Chr12	13763889	13763911	22
Deletion	Chr8	13924848	13924849	1
Deletion	Chr2	18831387	18831399	12
Deletion	Chr12	19430816	19430829	13
Deletion	Chr11	20717768	20717773	5
Deletion	Chr7	22583262	22583266	4
Deletion	Chr12	23033379	23033380	1
Deletion	Chr1	24950862	24950864	2
Deletion	Chr2	25057569	25057571	2
Deletion	Chr3	29401008	29401009	1
Deletion	Chr2	30743688	30743689	1
Deletion	Chr2	30754637	30754646	9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	112932	Chr11	430071	OsKitaake12g001100
Translocation	Chr12	112941	Chr11	442075	OsKitaake12g001100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes