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Mutant Information

Mutant Name	FN1505-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1505-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15419437 A-G Hetero INTERGENIC
SBS Chr1 25255728 G-A Hetero INTERGENIC
SBS Chr1 37246991 T-C Hetero INTERGENIC
SBS Chr3 6003026 C-A Hetero INTRON
SBS Chr3 9770376 T-A Hetero INTERGENIC
SBS Chr3 26292330 T-C Homo INTERGENIC
SBS Chr4 13921479 T-G Homo INTERGENIC
SBS Chr4 21359095 G-A Hetero INTERGENIC
SBS Chr5 5272463 A-G Hetero INTERGENIC
SBS Chr5 12703971 C-T Homo INTERGENIC
SBS Chr5 14030497 C-T Hetero INTERGENIC
SBS Chr6 13517749 T-C Hetero INTERGENIC
SBS Chr6 19343107 A-G Hetero INTERGENIC
SBS Chr6 20197763 G-T Hetero INTERGENIC
SBS Chr7 1930161 G-A Hetero UTR_3_PRIME
SBS Chr7 4721649 T-A Hetero INTERGENIC
SBS Chr7 6844091 C-A Hetero INTERGENIC
SBS Chr7 11027259 A-C Hetero INTERGENIC
SBS Chr7 13954896 T-C Hetero INTERGENIC
SBS Chr7 19396788 C-T Homo INTERGENIC
SBS Chr7 19396789 C-T Homo INTERGENIC
SBS Chr7 23363129 A-G Homo INTERGENIC
SBS Chr8 11770428 C-A Hetero INTRON
SBS Chr8 15943783 G-T Hetero INTERGENIC
SBS Chr8 19446403 C-A Hetero START_GAINED
SBS Chr8 20497164 A-G Hetero INTERGENIC
SBS Chr9 9010927 T-C Hetero INTERGENIC
SBS Chr9 9216895 T-G Hetero INTERGENIC
SBS Chr10 10063159 G-T Hetero INTERGENIC
SBS Chr10 16362869 A-T Hetero INTERGENIC
SBS Chr11 4973416 C-A Hetero INTERGENIC
SBS Chr11 25740654 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g208000
SBS Chr12 1642169 T-C Hetero INTERGENIC
SBS Chr12 1642171 G-C Hetero INTERGENIC
SBS Chr12 7139109 C-A Hetero INTRON
SBS Chr12 7162474 T-C Hetero INTRON
SBS Chr12 15299799 C-T Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 541001 880000 338999 52
Deletion Chr10 2270943 2270944 1
Deletion Chr5 3370036 3370038 2
Deletion Chr8 3924106 3924108 2
Deletion Chr12 4358254 4358256 2
Deletion Chr6 7019532 7019535 3
Deletion Chr5 11384626 11384627 1
Deletion Chr1 11618606 11618614 8
Deletion Chr11 17236566 17236569 3 OsKitaake11g134400
Deletion Chr1 17975091 17975093 2
Deletion Chr1 17988658 17988843 185 OsKitaake01g182400
Deletion Chr12 19933620 19933622 2
Deletion Chr2 21568005 21568009 4
Deletion Chr9 22665767 22665769 2
Deletion Chr2 24414001 24429000 14999
Deletion Chr11 26570453 26570455 2
Deletion Chr3 28582001 28596000 13999 OsKitaake03g296500

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 21495425 21495430 4
Insertion Chr4 32016197 32016200 2
Insertion Chr5 16817888 16817891 2
Insertion Chr6 12287658 12287660 1
Insertion Chr8 21202748 21202751 2
Insertion Chr4 23355941 23355944 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15419437	A-G	Hetero	INTERGENIC
SBS	Chr1	25255728	G-A	Hetero	INTERGENIC
SBS	Chr1	37246991	T-C	Hetero	INTERGENIC
SBS	Chr3	6003026	C-A	Hetero	INTRON
SBS	Chr3	9770376	T-A	Hetero	INTERGENIC
SBS	Chr3	26292330	T-C	Homo	INTERGENIC
SBS	Chr4	13921479	T-G	Homo	INTERGENIC
SBS	Chr4	21359095	G-A	Hetero	INTERGENIC
SBS	Chr5	5272463	A-G	Hetero	INTERGENIC
SBS	Chr5	12703971	C-T	Homo	INTERGENIC
SBS	Chr5	14030497	C-T	Hetero	INTERGENIC
SBS	Chr6	13517749	T-C	Hetero	INTERGENIC
SBS	Chr6	19343107	A-G	Hetero	INTERGENIC
SBS	Chr6	20197763	G-T	Hetero	INTERGENIC
SBS	Chr7	1930161	G-A	Hetero	UTR_3_PRIME
SBS	Chr7	4721649	T-A	Hetero	INTERGENIC
SBS	Chr7	6844091	C-A	Hetero	INTERGENIC
SBS	Chr7	11027259	A-C	Hetero	INTERGENIC
SBS	Chr7	13954896	T-C	Hetero	INTERGENIC
SBS	Chr7	19396788	C-T	Homo	INTERGENIC
SBS	Chr7	19396789	C-T	Homo	INTERGENIC
SBS	Chr7	23363129	A-G	Homo	INTERGENIC
SBS	Chr8	11770428	C-A	Hetero	INTRON
SBS	Chr8	15943783	G-T	Hetero	INTERGENIC
SBS	Chr8	19446403	C-A	Hetero	START_GAINED
SBS	Chr8	20497164	A-G	Hetero	INTERGENIC
SBS	Chr9	9010927	T-C	Hetero	INTERGENIC
SBS	Chr9	9216895	T-G	Hetero	INTERGENIC
SBS	Chr10	10063159	G-T	Hetero	INTERGENIC
SBS	Chr10	16362869	A-T	Hetero	INTERGENIC
SBS	Chr11	4973416	C-A	Hetero	INTERGENIC
SBS	Chr11	25740654	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g208000
SBS	Chr12	1642169	T-C	Hetero	INTERGENIC
SBS	Chr12	1642171	G-C	Hetero	INTERGENIC
SBS	Chr12	7139109	C-A	Hetero	INTRON
SBS	Chr12	7162474	T-C	Hetero	INTRON
SBS	Chr12	15299799	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	541001	880000	338999	52
Deletion	Chr10	2270943	2270944	1
Deletion	Chr5	3370036	3370038	2
Deletion	Chr8	3924106	3924108	2
Deletion	Chr12	4358254	4358256	2
Deletion	Chr6	7019532	7019535	3
Deletion	Chr5	11384626	11384627	1
Deletion	Chr1	11618606	11618614	8
Deletion	Chr11	17236566	17236569	3	OsKitaake11g134400
Deletion	Chr1	17975091	17975093	2
Deletion	Chr1	17988658	17988843	185	OsKitaake01g182400
Deletion	Chr12	19933620	19933622	2
Deletion	Chr2	21568005	21568009	4
Deletion	Chr9	22665767	22665769	2
Deletion	Chr2	24414001	24429000	14999
Deletion	Chr11	26570453	26570455	2
Deletion	Chr3	28582001	28596000	13999	OsKitaake03g296500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes