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Mutant Information

Mutant Name	FN1506-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1506-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 50

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 316075 G-T Hetero INTERGENIC
SBS Chr1 10702842 T-G Hetero INTERGENIC
SBS Chr1 36863784 G-A Hetero INTERGENIC
SBS Chr1 38976551 G-T Hetero INTERGENIC
SBS Chr1 41402423 A-G Hetero INTRON
SBS Chr1 41796216 A-T Hetero INTERGENIC
SBS Chr2 12290828 G-A Hetero INTERGENIC
SBS Chr2 14262490 C-A Hetero INTERGENIC
SBS Chr2 27619430 A-G Hetero INTRON
SBS Chr3 8019137 C-T Hetero INTRON
SBS Chr3 18070468 C-A Hetero INTERGENIC
SBS Chr3 21864007 T-C Homo INTRON
SBS Chr3 24771812 G-A Homo INTERGENIC
SBS Chr3 30883402 C-T Hetero INTERGENIC
SBS Chr3 32106897 T-C Hetero INTRON
SBS Chr3 32858576 A-T Hetero INTERGENIC
SBS Chr3 36172278 T-A Homo INTERGENIC
SBS Chr4 3715696 T-A Hetero INTERGENIC
SBS Chr4 8305168 G-T Hetero INTERGENIC
SBS Chr4 22154778 G-T Hetero INTERGENIC
SBS Chr6 4376418 G-T Hetero INTRON
SBS Chr6 12133131 G-A Hetero INTERGENIC
SBS Chr6 28268683 G-A Hetero INTERGENIC
SBS Chr6 28301095 C-T Hetero INTERGENIC
SBS Chr6 28340644 C-G Homo INTERGENIC
SBS Chr7 857020 A-T Homo INTERGENIC
SBS Chr7 7536890 C-T Hetero INTERGENIC
SBS Chr7 28665754 C-T Hetero INTERGENIC
SBS Chr8 14895714 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g116700
SBS Chr8 23504606 G-T Hetero INTERGENIC
SBS Chr8 25978613 T-A Hetero INTERGENIC
SBS Chr8 25978617 G-T Hetero INTERGENIC
SBS Chr9 7304856 C-A Hetero INTERGENIC
SBS Chr9 7732492 G-T Hetero INTERGENIC
SBS Chr9 15629261 G-T Hetero INTRON
SBS Chr9 15629263 G-T Hetero INTRON
SBS Chr9 16210567 G-A Hetero SYNONYMOUS_CODING
SBS Chr11 2131338 T-A Hetero INTERGENIC
SBS Chr11 3126954 G-T Hetero INTERGENIC
SBS Chr11 3580854 C-T Hetero INTERGENIC
SBS Chr11 6067509 C-T Hetero INTERGENIC
SBS Chr11 8938128 C-A Hetero INTERGENIC
SBS Chr11 16340540 A-G Hetero INTERGENIC
SBS Chr11 16734000 G-T Hetero INTERGENIC
SBS Chr11 19019092 A-G Hetero INTERGENIC
SBS Chr11 23166979 C-T Hetero INTRON
SBS Chr12 7011084 G-A Hetero INTERGENIC
SBS Chr12 8355324 T-C Hetero UTR_3_PRIME
SBS Chr12 25258079 G-A Hetero INTERGENIC
SBS Chr12 26275249 C-A Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 8736907 8736911 4
Deletion Chr6 10866001 10956000 89999 6
Deletion Chr6 10958001 11179000 220999 17
Deletion Chr6 11183001 11199000 15999 OsKitaake06g124000
Deletion Chr1 12347191 12347201 10
Deletion Chr1 12865798 12865799 1
Deletion Chr7 16137001 16165000 27999 2
Deletion Chr12 19582289 19582291 2
Deletion Chr4 21984215 21984216 1 OsKitaake04g127800

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr12 4269706 4269709 2
Insertion Chr4 18345247 18345250 2
Insertion Chr8 8960664 8960673 8

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 11792639 12516783 2
Inversion Chr7 16032456 16137263 OsKitaake07g133800
Inversion Chr7 16032597 16163102

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 5688488 Chr5 28898347 OsKitaake05g272100
Translocation Chr6 5697386 Chr5 28898335 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	316075	G-T	Hetero	INTERGENIC
SBS	Chr1	10702842	T-G	Hetero	INTERGENIC
SBS	Chr1	36863784	G-A	Hetero	INTERGENIC
SBS	Chr1	38976551	G-T	Hetero	INTERGENIC
SBS	Chr1	41402423	A-G	Hetero	INTRON
SBS	Chr1	41796216	A-T	Hetero	INTERGENIC
SBS	Chr2	12290828	G-A	Hetero	INTERGENIC
SBS	Chr2	14262490	C-A	Hetero	INTERGENIC
SBS	Chr2	27619430	A-G	Hetero	INTRON
SBS	Chr3	8019137	C-T	Hetero	INTRON
SBS	Chr3	18070468	C-A	Hetero	INTERGENIC
SBS	Chr3	21864007	T-C	Homo	INTRON
SBS	Chr3	24771812	G-A	Homo	INTERGENIC
SBS	Chr3	30883402	C-T	Hetero	INTERGENIC
SBS	Chr3	32106897	T-C	Hetero	INTRON
SBS	Chr3	32858576	A-T	Hetero	INTERGENIC
SBS	Chr3	36172278	T-A	Homo	INTERGENIC
SBS	Chr4	3715696	T-A	Hetero	INTERGENIC
SBS	Chr4	8305168	G-T	Hetero	INTERGENIC
SBS	Chr4	22154778	G-T	Hetero	INTERGENIC
SBS	Chr6	4376418	G-T	Hetero	INTRON
SBS	Chr6	12133131	G-A	Hetero	INTERGENIC
SBS	Chr6	28268683	G-A	Hetero	INTERGENIC
SBS	Chr6	28301095	C-T	Hetero	INTERGENIC
SBS	Chr6	28340644	C-G	Homo	INTERGENIC
SBS	Chr7	857020	A-T	Homo	INTERGENIC
SBS	Chr7	7536890	C-T	Hetero	INTERGENIC
SBS	Chr7	28665754	C-T	Hetero	INTERGENIC
SBS	Chr8	14895714	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g116700
SBS	Chr8	23504606	G-T	Hetero	INTERGENIC
SBS	Chr8	25978613	T-A	Hetero	INTERGENIC
SBS	Chr8	25978617	G-T	Hetero	INTERGENIC
SBS	Chr9	7304856	C-A	Hetero	INTERGENIC
SBS	Chr9	7732492	G-T	Hetero	INTERGENIC
SBS	Chr9	15629261	G-T	Hetero	INTRON
SBS	Chr9	15629263	G-T	Hetero	INTRON
SBS	Chr9	16210567	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	2131338	T-A	Hetero	INTERGENIC
SBS	Chr11	3126954	G-T	Hetero	INTERGENIC
SBS	Chr11	3580854	C-T	Hetero	INTERGENIC
SBS	Chr11	6067509	C-T	Hetero	INTERGENIC
SBS	Chr11	8938128	C-A	Hetero	INTERGENIC
SBS	Chr11	16340540	A-G	Hetero	INTERGENIC
SBS	Chr11	16734000	G-T	Hetero	INTERGENIC
SBS	Chr11	19019092	A-G	Hetero	INTERGENIC
SBS	Chr11	23166979	C-T	Hetero	INTRON
SBS	Chr12	7011084	G-A	Hetero	INTERGENIC
SBS	Chr12	8355324	T-C	Hetero	UTR_3_PRIME
SBS	Chr12	25258079	G-A	Hetero	INTERGENIC
SBS	Chr12	26275249	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	8736907	8736911	4
Deletion	Chr6	10866001	10956000	89999	6
Deletion	Chr6	10958001	11179000	220999	17
Deletion	Chr6	11183001	11199000	15999	OsKitaake06g124000
Deletion	Chr1	12347191	12347201	10
Deletion	Chr1	12865798	12865799	1
Deletion	Chr7	16137001	16165000	27999	2
Deletion	Chr12	19582289	19582291	2
Deletion	Chr4	21984215	21984216	1	OsKitaake04g127800

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	11792639	12516783	2
Inversion	Chr7	16032456	16137263	OsKitaake07g133800
Inversion	Chr7	16032597	16163102

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes