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Mutant Information

Mutant Name	FN1508-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1508-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 24080301 A-T Hetero INTERGENIC
SBS Chr1 27619741 G-C Hetero INTERGENIC
SBS Chr1 28015618 G-T Hetero INTRON
SBS Chr1 31301743 T-A Hetero INTERGENIC
SBS Chr1 35393556 A-G Hetero SYNONYMOUS_CODING
SBS Chr2 572904 C-A Homo INTERGENIC
SBS Chr2 13709115 C-T Homo INTERGENIC
SBS Chr2 31230975 C-T Homo INTERGENIC
SBS Chr2 33236928 A-T Homo INTRON
SBS Chr3 30231531 G-A Homo INTRON
SBS Chr4 5056605 T-C Hetero INTERGENIC
SBS Chr4 5850224 A-T Hetero INTRON
SBS Chr4 6451192 A-G Hetero INTERGENIC
SBS Chr4 13764049 C-A Hetero INTERGENIC
SBS Chr4 34687604 C-T Hetero INTERGENIC
SBS Chr4 36015851 G-C Hetero INTRON
SBS Chr5 4598088 G-A Homo INTERGENIC
SBS Chr5 6780413 C-T Homo INTRON
SBS Chr5 28647455 T-C Homo INTERGENIC
SBS Chr6 6481518 C-T Homo INTERGENIC
SBS Chr7 4592115 T-G Hetero INTRON
SBS Chr7 8316640 C-T Homo INTERGENIC
SBS Chr7 23972006 T-G Homo UTR_5_PRIME
SBS Chr7 24799858 A-G Homo INTRON
SBS Chr7 25002096 C-A Homo INTERGENIC
SBS Chr8 7740567 G-A Hetero INTERGENIC
SBS Chr8 16750641 G-A Homo INTERGENIC
SBS Chr8 24061207 G-A Homo INTERGENIC
SBS Chr9 6499210 C-T Hetero INTERGENIC
SBS Chr9 14390460 T-C Hetero INTRON
SBS Chr10 15286581 C-G Homo NON_SYNONYMOUS_CODING OsKitaake10g097600
SBS Chr11 12214970 C-T Hetero INTERGENIC
SBS Chr11 18860529 A-T Hetero INTERGENIC
SBS Chr11 22221853 G-A Hetero INTERGENIC
SBS Chr11 25880420 A-G Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 568691 568692 1 OsKitaake07g006300
Deletion Chr2 7571001 7638000 66999 6
Deletion Chr7 10024200 10024201 1
Deletion Chr12 11925075 11925090 15
Deletion Chr1 17285421 17285794 373
Deletion Chr2 19779804 19779814 10
Deletion Chr4 20603200 20603205 5 OsKitaake04g110950
Deletion Chr1 24277001 24360000 82999 8
Deletion Chr7 24689807 24689817 10

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 16712484 16712487 2
Insertion Chr10 13391073 13391076 2
Insertion Chr2 13865666 13865669 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24080301	A-T	Hetero	INTERGENIC
SBS	Chr1	27619741	G-C	Hetero	INTERGENIC
SBS	Chr1	28015618	G-T	Hetero	INTRON
SBS	Chr1	31301743	T-A	Hetero	INTERGENIC
SBS	Chr1	35393556	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr2	572904	C-A	Homo	INTERGENIC
SBS	Chr2	13709115	C-T	Homo	INTERGENIC
SBS	Chr2	31230975	C-T	Homo	INTERGENIC
SBS	Chr2	33236928	A-T	Homo	INTRON
SBS	Chr3	30231531	G-A	Homo	INTRON
SBS	Chr4	5056605	T-C	Hetero	INTERGENIC
SBS	Chr4	5850224	A-T	Hetero	INTRON
SBS	Chr4	6451192	A-G	Hetero	INTERGENIC
SBS	Chr4	13764049	C-A	Hetero	INTERGENIC
SBS	Chr4	34687604	C-T	Hetero	INTERGENIC
SBS	Chr4	36015851	G-C	Hetero	INTRON
SBS	Chr5	4598088	G-A	Homo	INTERGENIC
SBS	Chr5	6780413	C-T	Homo	INTRON
SBS	Chr5	28647455	T-C	Homo	INTERGENIC
SBS	Chr6	6481518	C-T	Homo	INTERGENIC
SBS	Chr7	4592115	T-G	Hetero	INTRON
SBS	Chr7	8316640	C-T	Homo	INTERGENIC
SBS	Chr7	23972006	T-G	Homo	UTR_5_PRIME
SBS	Chr7	24799858	A-G	Homo	INTRON
SBS	Chr7	25002096	C-A	Homo	INTERGENIC
SBS	Chr8	7740567	G-A	Hetero	INTERGENIC
SBS	Chr8	16750641	G-A	Homo	INTERGENIC
SBS	Chr8	24061207	G-A	Homo	INTERGENIC
SBS	Chr9	6499210	C-T	Hetero	INTERGENIC
SBS	Chr9	14390460	T-C	Hetero	INTRON
SBS	Chr10	15286581	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g097600
SBS	Chr11	12214970	C-T	Hetero	INTERGENIC
SBS	Chr11	18860529	A-T	Hetero	INTERGENIC
SBS	Chr11	22221853	G-A	Hetero	INTERGENIC
SBS	Chr11	25880420	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	568691	568692	1	OsKitaake07g006300
Deletion	Chr2	7571001	7638000	66999	6
Deletion	Chr7	10024200	10024201	1
Deletion	Chr12	11925075	11925090	15
Deletion	Chr1	17285421	17285794	373
Deletion	Chr2	19779804	19779814	10
Deletion	Chr4	20603200	20603205	5	OsKitaake04g110950
Deletion	Chr1	24277001	24360000	82999	8
Deletion	Chr7	24689807	24689817	10

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes