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Mutant Information

Mutant Name	FN1513-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1513-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 32831330 C-G Hetero UTR_3_PRIME
SBS Chr1 43925911 T-A Hetero INTERGENIC
SBS Chr2 24271650 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g240400
SBS Chr2 26882234 T-C Hetero INTERGENIC
SBS Chr2 34636790 A-T Hetero INTERGENIC
SBS Chr3 32183119 A-G Homo UTR_3_PRIME
SBS Chr4 18685666 C-T Hetero INTERGENIC
SBS Chr4 33887444 A-T Hetero INTERGENIC
SBS Chr4 34273214 G-C Hetero INTRON
SBS Chr5 21910703 A-T Hetero INTERGENIC
SBS Chr5 28329712 G-T Hetero SPLICE_SITE_REGION
SBS Chr6 3393909 C-A Hetero INTERGENIC
SBS Chr6 7921946 T-G Hetero INTERGENIC
SBS Chr6 16450381 A-T Hetero INTERGENIC
SBS Chr6 18446044 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g168900
SBS Chr8 5104939 G-A Hetero INTERGENIC
SBS Chr9 8279362 A-T Hetero INTERGENIC
SBS Chr10 19139240 G-T Hetero INTRON
SBS Chr11 11517241 A-C Hetero INTERGENIC
SBS Chr11 11517248 C-A Hetero INTERGENIC
SBS Chr11 12652504 G-T Hetero INTERGENIC
SBS Chr11 13623113 A-C Hetero INTERGENIC
SBS Chr12 2650302 G-A Hetero INTERGENIC
SBS Chr12 4749853 C-A Hetero INTERGENIC
SBS Chr12 7929879 G-T Hetero INTERGENIC
SBS Chr12 11932217 A-G Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 236001 244000 7999
Deletion Chr2 930001 940000 9999 OsKitaake02g013300
Deletion Chr5 1361001 1385000 23999 3
Deletion Chr11 2725715 2725732 17
Deletion Chr1 9639001 9660000 20999 2
Deletion Chr8 12529001 12543000 13999 OsKitaake08g107500
Deletion Chr7 16708368 16708369 1
Deletion Chr9 19150001 19228000 77999 16
Deletion Chr4 19434001 19448000 13999 OsKitaake04g099601
Deletion Chr1 23252001 23272000 19999 OsKitaake01g222400
Deletion Chr4 24459001 24472000 12999
Deletion Chr5 25106001 25119000 12999 2
Deletion Chr1 26020660 26020664 4
Deletion Chr1 26061001 26069000 7999
Deletion Chr12 26721001 26735000 13999 OsKitaake12g222100
Deletion Chr4 27621188 27621189 1 OsKitaake04g202600
Deletion Chr3 28581001 28595000 13999 OsKitaake03g296500
Deletion Chr1 29010504 29010509 5
Deletion Chr4 29014692 29014693 1 OsKitaake04g218800

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 14329035 14329038 2
Insertion Chr5 30226856 30226864 7

Inversions: 13

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 679689 679898
Inversion Chr7 4757653 4757877 OsKitaake07g058600
Inversion Chr1 7237193 7279863
Inversion Chr1 7279884 7544700 OsKitaake01g094500
Inversion Chr6 8842453 8842671 OsKitaake06g106900
Inversion Chr8 9054522 9054712 OsKitaake08g082600
Inversion Chr9 9344634 9456288 OsKitaake09g056500
Inversion Chr9 9344641 9456291 OsKitaake09g056500
Inversion Chr9 11057820 11472247 OsKitaake09g071500
Inversion Chr9 11057828 11472247 OsKitaake09g071500
Inversion Chr5 18595338 18595620
Inversion Chr5 19658820 19927914 OsKitaake05g155000
Inversion Chr6 28432058 28432223 OsKitaake06g260400

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 8316479 Chr9 12650083
Translocation Chr9 11056599 Chr6 5759165 OsKitaake06g075800
Translocation Chr9 11056689 Chr6 5758630 OsKitaake06g075800
Translocation Chr8 13582644 Chr4 9661027

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	32831330	C-G	Hetero	UTR_3_PRIME
SBS	Chr1	43925911	T-A	Hetero	INTERGENIC
SBS	Chr2	24271650	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g240400
SBS	Chr2	26882234	T-C	Hetero	INTERGENIC
SBS	Chr2	34636790	A-T	Hetero	INTERGENIC
SBS	Chr3	32183119	A-G	Homo	UTR_3_PRIME
SBS	Chr4	18685666	C-T	Hetero	INTERGENIC
SBS	Chr4	33887444	A-T	Hetero	INTERGENIC
SBS	Chr4	34273214	G-C	Hetero	INTRON
SBS	Chr5	21910703	A-T	Hetero	INTERGENIC
SBS	Chr5	28329712	G-T	Hetero	SPLICE_SITE_REGION
SBS	Chr6	3393909	C-A	Hetero	INTERGENIC
SBS	Chr6	7921946	T-G	Hetero	INTERGENIC
SBS	Chr6	16450381	A-T	Hetero	INTERGENIC
SBS	Chr6	18446044	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g168900
SBS	Chr8	5104939	G-A	Hetero	INTERGENIC
SBS	Chr9	8279362	A-T	Hetero	INTERGENIC
SBS	Chr10	19139240	G-T	Hetero	INTRON
SBS	Chr11	11517241	A-C	Hetero	INTERGENIC
SBS	Chr11	11517248	C-A	Hetero	INTERGENIC
SBS	Chr11	12652504	G-T	Hetero	INTERGENIC
SBS	Chr11	13623113	A-C	Hetero	INTERGENIC
SBS	Chr12	2650302	G-A	Hetero	INTERGENIC
SBS	Chr12	4749853	C-A	Hetero	INTERGENIC
SBS	Chr12	7929879	G-T	Hetero	INTERGENIC
SBS	Chr12	11932217	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	236001	244000	7999
Deletion	Chr2	930001	940000	9999	OsKitaake02g013300
Deletion	Chr5	1361001	1385000	23999	3
Deletion	Chr11	2725715	2725732	17
Deletion	Chr1	9639001	9660000	20999	2
Deletion	Chr8	12529001	12543000	13999	OsKitaake08g107500
Deletion	Chr7	16708368	16708369	1
Deletion	Chr9	19150001	19228000	77999	16
Deletion	Chr4	19434001	19448000	13999	OsKitaake04g099601
Deletion	Chr1	23252001	23272000	19999	OsKitaake01g222400
Deletion	Chr4	24459001	24472000	12999
Deletion	Chr5	25106001	25119000	12999	2
Deletion	Chr1	26020660	26020664	4
Deletion	Chr1	26061001	26069000	7999
Deletion	Chr12	26721001	26735000	13999	OsKitaake12g222100
Deletion	Chr4	27621188	27621189	1	OsKitaake04g202600
Deletion	Chr3	28581001	28595000	13999	OsKitaake03g296500
Deletion	Chr1	29010504	29010509	5
Deletion	Chr4	29014692	29014693	1	OsKitaake04g218800

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	679689	679898
Inversion	Chr7	4757653	4757877	OsKitaake07g058600
Inversion	Chr1	7237193	7279863
Inversion	Chr1	7279884	7544700	OsKitaake01g094500
Inversion	Chr6	8842453	8842671	OsKitaake06g106900
Inversion	Chr8	9054522	9054712	OsKitaake08g082600
Inversion	Chr9	9344634	9456288	OsKitaake09g056500
Inversion	Chr9	9344641	9456291	OsKitaake09g056500
Inversion	Chr9	11057820	11472247	OsKitaake09g071500
Inversion	Chr9	11057828	11472247	OsKitaake09g071500
Inversion	Chr5	18595338	18595620
Inversion	Chr5	19658820	19927914	OsKitaake05g155000
Inversion	Chr6	28432058	28432223	OsKitaake06g260400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes