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Mutant Information

Mutant Name	FN1514-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1514-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 15045924 A-C Homo INTERGENIC
SBS Chr2 18390823 A-G Homo INTRON
SBS Chr2 24029429 C-A Hetero SYNONYMOUS_CODING
SBS Chr2 30529267 T-C Hetero INTRON
SBS Chr2 36699742 G-T Hetero INTERGENIC
SBS Chr2 36997792 A-G Hetero UTR_3_PRIME
SBS Chr3 2909894 G-A Hetero INTRON
SBS Chr3 5221561 A-T Hetero UTR_3_PRIME
SBS Chr3 5221563 A-G Hetero UTR_3_PRIME
SBS Chr3 5229270 A-G Hetero INTERGENIC
SBS Chr3 15185646 C-A Hetero INTERGENIC
SBS Chr3 18310042 T-C Hetero INTRON
SBS Chr3 19535202 G-A Hetero INTERGENIC
SBS Chr3 32166005 G-A Homo INTERGENIC
SBS Chr4 945381 A-G Hetero INTRON
SBS Chr4 5457256 G-A Hetero INTERGENIC
SBS Chr4 32896922 C-T Hetero INTERGENIC
SBS Chr4 34848405 C-T Hetero INTERGENIC
SBS Chr4 35572881 C-T Hetero INTERGENIC
SBS Chr6 1734318 A-C Homo INTERGENIC
SBS Chr6 3420416 C-T Hetero INTRON
SBS Chr7 1876272 T-C Hetero INTERGENIC
SBS Chr7 8349770 G-T Homo NON_SYNONYMOUS_CODING OsKitaake07g090850
SBS Chr7 15790112 A-G Homo INTERGENIC
SBS Chr8 6274020 C-T Hetero UTR_5_PRIME
SBS Chr8 29159192 C-T Homo INTERGENIC
SBS Chr9 61677 C-T Hetero INTERGENIC
SBS Chr9 1911778 T-C Hetero INTERGENIC
SBS Chr9 5260852 C-T Hetero INTERGENIC
SBS Chr9 5260855 C-T Hetero INTERGENIC
SBS Chr9 6282073 T-G Hetero INTERGENIC
SBS Chr9 13484492 C-G Hetero INTERGENIC
SBS Chr9 18330101 G-T Hetero INTERGENIC
SBS Chr9 20672836 T-A Hetero INTERGENIC
SBS Chr10 207142 A-T Hetero INTERGENIC
SBS Chr11 3255209 G-A Hetero INTERGENIC
SBS Chr11 16213183 T-A Hetero INTERGENIC
SBS Chr11 16362649 T-C Hetero INTERGENIC
SBS Chr12 3973498 G-A Homo INTRON
SBS Chr12 5800605 T-C Hetero UTR_5_PRIME
SBS Chr12 9017209 A-G Hetero INTRON
SBS Chr12 25100661 C-T Hetero INTERGENIC
SBS Chr12 26111363 C-T Hetero INTERGENIC
SBS Chr12 26430019 G-C Hetero INTERGENIC
SBS Chr12 26820494 G-A Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 832698 832702 4
Deletion Chr4 5338001 5436000 97999 5
Deletion Chr11 7496001 7658000 161999 13
Deletion Chr4 9158229 9158231 2 OsKitaake04g047100
Deletion Chr1 14048867 14048869 2
Deletion Chr6 19283359 19283360 1
Deletion Chr10 22148470 22148488 18
Deletion Chr5 22822650 22822652 2
Deletion Chr7 23824195 23824202 7
Deletion Chr1 31657001 31939000 281999 41

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 19249866 19249869 2
Insertion Chr7 29549252 29549255 2
Insertion Chr10 16989565 16989568 2
Insertion Chr11 18736078 18736082 3

Inversions: 9

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 7486567 7997100 OsKitaake11g084366
Inversion Chr9 8883151 8883390
Inversion Chr6 13449476 13449901 OsKitaake06g141700
Inversion Chr2 13589511 13629922
Inversion Chr11 15835887 15836226 OsKitaake11g127100
Inversion Chr3 21285996 21286366 OsKitaake03g235300
Inversion Chr4 25273833 25274045 OsKitaake04g171200
Inversion Chr5 25722842 25729499
Inversion Chr5 25722851 25729502

Translocations: 8

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 7380054 Chr2 13423366
Translocation Chr11 7486562 Chr2 13545159 OsKitaake11g084366
Translocation Chr11 7659878 Chr2 16124370
Translocation Chr11 7898701 Chr2 13545164 OsKitaake11g087400
Translocation Chr12 20577353 Chr4 10978743
Translocation Chr12 20581605 Chr4 10978685
Translocation Chr12 20581613 Chr7 24711028
Translocation Chr12 20581741 Chr7 24711029

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	15045924	A-C	Homo	INTERGENIC
SBS	Chr2	18390823	A-G	Homo	INTRON
SBS	Chr2	24029429	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	30529267	T-C	Hetero	INTRON
SBS	Chr2	36699742	G-T	Hetero	INTERGENIC
SBS	Chr2	36997792	A-G	Hetero	UTR_3_PRIME
SBS	Chr3	2909894	G-A	Hetero	INTRON
SBS	Chr3	5221561	A-T	Hetero	UTR_3_PRIME
SBS	Chr3	5221563	A-G	Hetero	UTR_3_PRIME
SBS	Chr3	5229270	A-G	Hetero	INTERGENIC
SBS	Chr3	15185646	C-A	Hetero	INTERGENIC
SBS	Chr3	18310042	T-C	Hetero	INTRON
SBS	Chr3	19535202	G-A	Hetero	INTERGENIC
SBS	Chr3	32166005	G-A	Homo	INTERGENIC
SBS	Chr4	945381	A-G	Hetero	INTRON
SBS	Chr4	5457256	G-A	Hetero	INTERGENIC
SBS	Chr4	32896922	C-T	Hetero	INTERGENIC
SBS	Chr4	34848405	C-T	Hetero	INTERGENIC
SBS	Chr4	35572881	C-T	Hetero	INTERGENIC
SBS	Chr6	1734318	A-C	Homo	INTERGENIC
SBS	Chr6	3420416	C-T	Hetero	INTRON
SBS	Chr7	1876272	T-C	Hetero	INTERGENIC
SBS	Chr7	8349770	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g090850
SBS	Chr7	15790112	A-G	Homo	INTERGENIC
SBS	Chr8	6274020	C-T	Hetero	UTR_5_PRIME
SBS	Chr8	29159192	C-T	Homo	INTERGENIC
SBS	Chr9	61677	C-T	Hetero	INTERGENIC
SBS	Chr9	1911778	T-C	Hetero	INTERGENIC
SBS	Chr9	5260852	C-T	Hetero	INTERGENIC
SBS	Chr9	5260855	C-T	Hetero	INTERGENIC
SBS	Chr9	6282073	T-G	Hetero	INTERGENIC
SBS	Chr9	13484492	C-G	Hetero	INTERGENIC
SBS	Chr9	18330101	G-T	Hetero	INTERGENIC
SBS	Chr9	20672836	T-A	Hetero	INTERGENIC
SBS	Chr10	207142	A-T	Hetero	INTERGENIC
SBS	Chr11	3255209	G-A	Hetero	INTERGENIC
SBS	Chr11	16213183	T-A	Hetero	INTERGENIC
SBS	Chr11	16362649	T-C	Hetero	INTERGENIC
SBS	Chr12	3973498	G-A	Homo	INTRON
SBS	Chr12	5800605	T-C	Hetero	UTR_5_PRIME
SBS	Chr12	9017209	A-G	Hetero	INTRON
SBS	Chr12	25100661	C-T	Hetero	INTERGENIC
SBS	Chr12	26111363	C-T	Hetero	INTERGENIC
SBS	Chr12	26430019	G-C	Hetero	INTERGENIC
SBS	Chr12	26820494	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	832698	832702	4
Deletion	Chr4	5338001	5436000	97999	5
Deletion	Chr11	7496001	7658000	161999	13
Deletion	Chr4	9158229	9158231	2	OsKitaake04g047100
Deletion	Chr1	14048867	14048869	2
Deletion	Chr6	19283359	19283360	1
Deletion	Chr10	22148470	22148488	18
Deletion	Chr5	22822650	22822652	2
Deletion	Chr7	23824195	23824202	7
Deletion	Chr1	31657001	31939000	281999	41

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	7486567	7997100	OsKitaake11g084366
Inversion	Chr9	8883151	8883390
Inversion	Chr6	13449476	13449901	OsKitaake06g141700
Inversion	Chr2	13589511	13629922
Inversion	Chr11	15835887	15836226	OsKitaake11g127100
Inversion	Chr3	21285996	21286366	OsKitaake03g235300
Inversion	Chr4	25273833	25274045	OsKitaake04g171200
Inversion	Chr5	25722842	25729499
Inversion	Chr5	25722851	25729502

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes