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Mutant Information

Mutant Name	FN1515-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1515-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14061180 C-A Homo INTERGENIC
SBS Chr1 27438983 C-T Hetero INTERGENIC
SBS Chr1 30645867 T-C Hetero UTR_3_PRIME
SBS Chr2 2998373 G-A Hetero INTERGENIC
SBS Chr2 3745061 A-T Hetero INTERGENIC
SBS Chr2 7124779 T-A Hetero INTERGENIC
SBS Chr2 15369823 C-T Hetero INTERGENIC
SBS Chr2 32083003 G-A Hetero STOP_GAINED OsKitaake02g327800
SBS Chr3 6487002 C-T Homo INTERGENIC
SBS Chr3 11610158 A-T Hetero INTERGENIC
SBS Chr3 18969795 A-T Homo INTERGENIC
SBS Chr4 1389209 G-A Hetero INTERGENIC
SBS Chr4 6021156 A-G Hetero INTERGENIC
SBS Chr4 17972912 A-G Hetero INTERGENIC
SBS Chr4 34746655 C-G Hetero INTERGENIC
SBS Chr5 13671197 C-T Homo INTERGENIC
SBS Chr5 24927238 C-A Hetero INTERGENIC
SBS Chr5 27166233 C-T Hetero SYNONYMOUS_CODING
SBS Chr6 23549833 G-T Hetero SYNONYMOUS_CODING
SBS Chr6 23549834 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g207800
SBS Chr6 24861104 C-T Hetero INTERGENIC
SBS Chr7 4045159 T-C Homo INTERGENIC
SBS Chr7 6827694 A-T Hetero INTERGENIC
SBS Chr7 11120445 G-T Hetero INTERGENIC
SBS Chr7 14981908 T-C Hetero INTERGENIC
SBS Chr7 26665698 G-A Hetero INTRON
SBS Chr8 10646311 C-A Hetero INTERGENIC
SBS Chr8 14619707 T-A Hetero INTERGENIC
SBS Chr8 22227105 C-T Hetero INTERGENIC
SBS Chr9 12924628 A-G Homo INTERGENIC
SBS Chr9 19719725 G-T Hetero SYNONYMOUS_CODING
SBS Chr10 12513311 G-A Hetero INTERGENIC
SBS Chr11 17663893 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g138500
SBS Chr11 19075887 C-T Hetero INTERGENIC
SBS Chr11 25247226 T-A Hetero INTERGENIC
SBS Chr12 7877540 C-T Hetero INTERGENIC
SBS Chr12 18966767 C-T Homo INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1904398 1904400 2
Deletion Chr8 2355865 2355869 4
Deletion Chr12 2806756 2806762 6
Deletion Chr7 3970565 3970580 15
Deletion Chr2 4332306 4332310 4
Deletion Chr9 5469806 5469809 3
Deletion Chr7 8858830 8858838 8
Deletion Chr9 13331463 13331471 8
Deletion Chr11 13802188 13802189 1
Deletion Chr11 14261203 14261204 1 OsKitaake11g119200
Deletion Chr6 14301371 14301373 2
Deletion Chr2 15698309 15698310 1 OsKitaake02g162600
Deletion Chr7 19193325 19193326 1 OsKitaake07g155600
Deletion Chr8 21126498 21126500 2 OsKitaake08g158600
Deletion Chr2 21130134 21130150 16
Deletion Chr6 22954769 22954770 1
Deletion Chr8 23125282 23125283 1
Deletion Chr6 24464239 24464255 16
Deletion Chr8 27145215 27145217 2
Deletion Chr3 35706498 35706501 3
Deletion Chr4 36534604 36534605 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 56230 56233 2
Insertion Chr6 2836958 2836961 2
Insertion Chr11 1823218 1823221 2
Insertion Chr11 24769842 24769845 2

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 2398921 2399344
Inversion Chr3 7799473 7799768
Inversion Chr4 14135750 14136030
Inversion Chr4 14135754 14136030
Inversion Chr11 16231669 16386709
Inversion Chr11 16231678 16386722
Inversion Chr2 22525834 22526146

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14061180	C-A	Homo	INTERGENIC
SBS	Chr1	27438983	C-T	Hetero	INTERGENIC
SBS	Chr1	30645867	T-C	Hetero	UTR_3_PRIME
SBS	Chr2	2998373	G-A	Hetero	INTERGENIC
SBS	Chr2	3745061	A-T	Hetero	INTERGENIC
SBS	Chr2	7124779	T-A	Hetero	INTERGENIC
SBS	Chr2	15369823	C-T	Hetero	INTERGENIC
SBS	Chr2	32083003	G-A	Hetero	STOP_GAINED	OsKitaake02g327800
SBS	Chr3	6487002	C-T	Homo	INTERGENIC
SBS	Chr3	11610158	A-T	Hetero	INTERGENIC
SBS	Chr3	18969795	A-T	Homo	INTERGENIC
SBS	Chr4	1389209	G-A	Hetero	INTERGENIC
SBS	Chr4	6021156	A-G	Hetero	INTERGENIC
SBS	Chr4	17972912	A-G	Hetero	INTERGENIC
SBS	Chr4	34746655	C-G	Hetero	INTERGENIC
SBS	Chr5	13671197	C-T	Homo	INTERGENIC
SBS	Chr5	24927238	C-A	Hetero	INTERGENIC
SBS	Chr5	27166233	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	23549833	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	23549834	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g207800
SBS	Chr6	24861104	C-T	Hetero	INTERGENIC
SBS	Chr7	4045159	T-C	Homo	INTERGENIC
SBS	Chr7	6827694	A-T	Hetero	INTERGENIC
SBS	Chr7	11120445	G-T	Hetero	INTERGENIC
SBS	Chr7	14981908	T-C	Hetero	INTERGENIC
SBS	Chr7	26665698	G-A	Hetero	INTRON
SBS	Chr8	10646311	C-A	Hetero	INTERGENIC
SBS	Chr8	14619707	T-A	Hetero	INTERGENIC
SBS	Chr8	22227105	C-T	Hetero	INTERGENIC
SBS	Chr9	12924628	A-G	Homo	INTERGENIC
SBS	Chr9	19719725	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr10	12513311	G-A	Hetero	INTERGENIC
SBS	Chr11	17663893	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g138500
SBS	Chr11	19075887	C-T	Hetero	INTERGENIC
SBS	Chr11	25247226	T-A	Hetero	INTERGENIC
SBS	Chr12	7877540	C-T	Hetero	INTERGENIC
SBS	Chr12	18966767	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1904398	1904400	2
Deletion	Chr8	2355865	2355869	4
Deletion	Chr12	2806756	2806762	6
Deletion	Chr7	3970565	3970580	15
Deletion	Chr2	4332306	4332310	4
Deletion	Chr9	5469806	5469809	3
Deletion	Chr7	8858830	8858838	8
Deletion	Chr9	13331463	13331471	8
Deletion	Chr11	13802188	13802189	1
Deletion	Chr11	14261203	14261204	1	OsKitaake11g119200
Deletion	Chr6	14301371	14301373	2
Deletion	Chr2	15698309	15698310	1	OsKitaake02g162600
Deletion	Chr7	19193325	19193326	1	OsKitaake07g155600
Deletion	Chr8	21126498	21126500	2	OsKitaake08g158600
Deletion	Chr2	21130134	21130150	16
Deletion	Chr6	22954769	22954770	1
Deletion	Chr8	23125282	23125283	1
Deletion	Chr6	24464239	24464255	16
Deletion	Chr8	27145215	27145217	2
Deletion	Chr3	35706498	35706501	3
Deletion	Chr4	36534604	36534605	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	2398921	2399344
Inversion	Chr3	7799473	7799768
Inversion	Chr4	14135750	14136030
Inversion	Chr4	14135754	14136030
Inversion	Chr11	16231669	16386709
Inversion	Chr11	16231678	16386722
Inversion	Chr2	22525834	22526146

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes