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Mutant Information

Mutant Name	FN1519-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1519-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13529292 T-A Hetero INTERGENIC
SBS Chr1 32501680 A-T Homo UTR_3_PRIME
SBS Chr1 42572022 T-A Hetero UTR_3_PRIME
SBS Chr2 7048740 T-A Hetero UTR_3_PRIME
SBS Chr2 27854984 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g280700
SBS Chr2 27854985 C-T Hetero SYNONYMOUS_CODING
SBS Chr2 32098519 C-T Hetero INTERGENIC
SBS Chr2 32098540 C-T Hetero INTERGENIC
SBS Chr3 4505356 A-T Homo UTR_3_PRIME
SBS Chr4 2113669 T-G Hetero INTERGENIC
SBS Chr4 2382726 G-T Hetero INTERGENIC
SBS Chr4 10785651 G-A Homo INTERGENIC
SBS Chr4 18199280 T-C Hetero INTERGENIC
SBS Chr4 23832420 C-T Homo INTERGENIC
SBS Chr4 24506316 T-A Hetero INTRON
SBS Chr4 28155560 G-T Hetero INTERGENIC
SBS Chr4 34901981 G-A Homo INTRON
SBS Chr5 3283072 A-T Hetero INTRON
SBS Chr5 9151378 A-G Hetero INTRON
SBS Chr5 16394619 A-G Hetero INTERGENIC
SBS Chr5 21610220 T-C Hetero INTERGENIC
SBS Chr5 22007415 T-G Homo NON_SYNONYMOUS_CODING OsKitaake05g179500
SBS Chr5 23978342 A-G Hetero INTERGENIC
SBS Chr6 17721279 A-G Hetero INTERGENIC
SBS Chr7 4691625 T-C Homo INTERGENIC
SBS Chr7 8940032 T-A Homo INTRON
SBS Chr7 19008202 C-A Hetero INTERGENIC
SBS Chr8 7820201 A-G Hetero INTERGENIC
SBS Chr8 10637985 C-T Hetero INTERGENIC
SBS Chr8 28377357 T-C Hetero INTERGENIC
SBS Chr9 8210908 C-T Hetero INTERGENIC
SBS Chr9 9276021 C-G Hetero INTERGENIC
SBS Chr10 10229566 G-T Hetero INTERGENIC
SBS Chr10 10421454 T-C Hetero INTERGENIC
SBS Chr11 6230521 T-G Hetero INTERGENIC
SBS Chr11 13721431 C-A Hetero INTERGENIC
SBS Chr11 14354877 C-T Homo NON_SYNONYMOUS_CODING OsKitaake11g120100
SBS Chr11 28593436 C-T Hetero INTERGENIC
SBS Chr12 4836261 C-T Hetero INTERGENIC
SBS Chr12 6415358 G-A Hetero INTERGENIC
SBS Chr12 10506290 T-A Hetero INTERGENIC
SBS Chr12 20695016 A-G Hetero INTRON
SBS Chr12 26390667 A-G Homo INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1446391 1446397 6 OsKitaake04g010500
Deletion Chr11 4625012 4625013 1
Deletion Chr11 5541128 5541130 2
Deletion Chr11 6231688 6231689 1
Deletion Chr5 9244731 9244736 5
Deletion Chr9 10171562 10171565 3
Deletion Chr1 10730781 10730783 2
Deletion Chr1 13896289 13896290 1
Deletion Chr12 14537238 14537239 1 OsKitaake12g116400
Deletion Chr9 15763785 15763792 7
Deletion Chr10 18150729 18150741 12
Deletion Chr3 18172435 18172440 5
Deletion Chr1 19321996 19322015 19
Deletion Chr5 22056668 22056685 17
Deletion Chr5 23557453 23557455 2
Deletion Chr4 24386001 24487000 100999 11
Deletion Chr6 27039596 27039597 1
Deletion Chr8 28285501 28285512 11
Deletion Chr4 29030059 29030067 8
Deletion Chr4 29681791 29681794 3
Deletion Chr3 37489557 37489569 12

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 13087880 13087883 2
Insertion Chr2 32832564 32832567 2
Insertion Chr3 476475 476478 2
Insertion Chr3 28053461 28053464 2

Inversions: 13

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 771110 771396 OsKitaake06g007600
Inversion Chr5 8997938 9463991
Inversion Chr9 9020016 9020515 OsKitaake09g052700
Inversion Chr6 11920686 11923305
Inversion Chr6 11920703 11923307
Inversion Chr10 19940572 19940998 OsKitaake10g150000
Inversion Chr4 21271399 21271928
Inversion Chr7 26846906 26847209 OsKitaake07g250200
Inversion Chr12 27002942 27053605 OsKitaake12g226500
Inversion Chr12 27002954 27053619 OsKitaake12g226500
Inversion Chr6 28649950 28650178 OsKitaake06g263500
Inversion Chr5 28927242 28927511 OsKitaake05g272600
Inversion Chr4 36877876 36878176 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 8845410 Chr4 34233809
Translocation Chr9 8845412 Chr4 34229184
Translocation Chr4 34229726 Chr2 5531651
Translocation Chr4 34230014 Chr2 5531653

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13529292	T-A	Hetero	INTERGENIC
SBS	Chr1	32501680	A-T	Homo	UTR_3_PRIME
SBS	Chr1	42572022	T-A	Hetero	UTR_3_PRIME
SBS	Chr2	7048740	T-A	Hetero	UTR_3_PRIME
SBS	Chr2	27854984	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g280700
SBS	Chr2	27854985	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	32098519	C-T	Hetero	INTERGENIC
SBS	Chr2	32098540	C-T	Hetero	INTERGENIC
SBS	Chr3	4505356	A-T	Homo	UTR_3_PRIME
SBS	Chr4	2113669	T-G	Hetero	INTERGENIC
SBS	Chr4	2382726	G-T	Hetero	INTERGENIC
SBS	Chr4	10785651	G-A	Homo	INTERGENIC
SBS	Chr4	18199280	T-C	Hetero	INTERGENIC
SBS	Chr4	23832420	C-T	Homo	INTERGENIC
SBS	Chr4	24506316	T-A	Hetero	INTRON
SBS	Chr4	28155560	G-T	Hetero	INTERGENIC
SBS	Chr4	34901981	G-A	Homo	INTRON
SBS	Chr5	3283072	A-T	Hetero	INTRON
SBS	Chr5	9151378	A-G	Hetero	INTRON
SBS	Chr5	16394619	A-G	Hetero	INTERGENIC
SBS	Chr5	21610220	T-C	Hetero	INTERGENIC
SBS	Chr5	22007415	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g179500
SBS	Chr5	23978342	A-G	Hetero	INTERGENIC
SBS	Chr6	17721279	A-G	Hetero	INTERGENIC
SBS	Chr7	4691625	T-C	Homo	INTERGENIC
SBS	Chr7	8940032	T-A	Homo	INTRON
SBS	Chr7	19008202	C-A	Hetero	INTERGENIC
SBS	Chr8	7820201	A-G	Hetero	INTERGENIC
SBS	Chr8	10637985	C-T	Hetero	INTERGENIC
SBS	Chr8	28377357	T-C	Hetero	INTERGENIC
SBS	Chr9	8210908	C-T	Hetero	INTERGENIC
SBS	Chr9	9276021	C-G	Hetero	INTERGENIC
SBS	Chr10	10229566	G-T	Hetero	INTERGENIC
SBS	Chr10	10421454	T-C	Hetero	INTERGENIC
SBS	Chr11	6230521	T-G	Hetero	INTERGENIC
SBS	Chr11	13721431	C-A	Hetero	INTERGENIC
SBS	Chr11	14354877	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g120100
SBS	Chr11	28593436	C-T	Hetero	INTERGENIC
SBS	Chr12	4836261	C-T	Hetero	INTERGENIC
SBS	Chr12	6415358	G-A	Hetero	INTERGENIC
SBS	Chr12	10506290	T-A	Hetero	INTERGENIC
SBS	Chr12	20695016	A-G	Hetero	INTRON
SBS	Chr12	26390667	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1446391	1446397	6	OsKitaake04g010500
Deletion	Chr11	4625012	4625013	1
Deletion	Chr11	5541128	5541130	2
Deletion	Chr11	6231688	6231689	1
Deletion	Chr5	9244731	9244736	5
Deletion	Chr9	10171562	10171565	3
Deletion	Chr1	10730781	10730783	2
Deletion	Chr1	13896289	13896290	1
Deletion	Chr12	14537238	14537239	1	OsKitaake12g116400
Deletion	Chr9	15763785	15763792	7
Deletion	Chr10	18150729	18150741	12
Deletion	Chr3	18172435	18172440	5
Deletion	Chr1	19321996	19322015	19
Deletion	Chr5	22056668	22056685	17
Deletion	Chr5	23557453	23557455	2
Deletion	Chr4	24386001	24487000	100999	11
Deletion	Chr6	27039596	27039597	1
Deletion	Chr8	28285501	28285512	11
Deletion	Chr4	29030059	29030067	8
Deletion	Chr4	29681791	29681794	3
Deletion	Chr3	37489557	37489569	12

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	771110	771396	OsKitaake06g007600
Inversion	Chr5	8997938	9463991
Inversion	Chr9	9020016	9020515	OsKitaake09g052700
Inversion	Chr6	11920686	11923305
Inversion	Chr6	11920703	11923307
Inversion	Chr10	19940572	19940998	OsKitaake10g150000
Inversion	Chr4	21271399	21271928
Inversion	Chr7	26846906	26847209	OsKitaake07g250200
Inversion	Chr12	27002942	27053605	OsKitaake12g226500
Inversion	Chr12	27002954	27053619	OsKitaake12g226500
Inversion	Chr6	28649950	28650178	OsKitaake06g263500
Inversion	Chr5	28927242	28927511	OsKitaake05g272600
Inversion	Chr4	36877876	36878176	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes