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Mutant Information

Mutant Name	FN1520-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1520-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 57

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 498210 G-A Hetero INTERGENIC
SBS Chr1 1055043 C-T Hetero INTRON
SBS Chr1 5835253 G-A Hetero INTERGENIC
SBS Chr1 7136942 T-C Hetero INTERGENIC
SBS Chr1 10859267 C-A Hetero INTERGENIC
SBS Chr1 22117932 G-A Homo INTERGENIC
SBS Chr1 35333452 G-A Hetero INTERGENIC
SBS Chr2 12616972 G-T Hetero INTRON
SBS Chr2 15598341 A-G Hetero INTERGENIC
SBS Chr2 17343152 C-T Hetero INTERGENIC
SBS Chr3 9990901 T-C Hetero INTERGENIC
SBS Chr3 16415326 A-G Homo INTERGENIC
SBS Chr3 21444275 G-T Hetero INTERGENIC
SBS Chr3 23579500 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g253400
SBS Chr3 29890188 T-G Homo INTERGENIC
SBS Chr4 1475936 C-T Hetero INTERGENIC
SBS Chr4 10369086 C-A Hetero INTERGENIC
SBS Chr4 25280264 A-C Homo INTERGENIC
SBS Chr4 25280265 G-T Homo INTERGENIC
SBS Chr5 2159321 C-T Hetero INTERGENIC
SBS Chr5 11434902 C-T Hetero INTERGENIC
SBS Chr5 16362937 C-T Hetero INTERGENIC
SBS Chr5 22616524 A-T Homo INTERGENIC
SBS Chr5 23043188 T-A Homo NON_SYNONYMOUS_CODING OsKitaake05g191600
SBS Chr6 6925693 G-T Hetero UTR_3_PRIME
SBS Chr6 10249316 T-C Hetero INTERGENIC
SBS Chr7 8352698 C-T Hetero INTERGENIC
SBS Chr7 11112497 C-T Hetero INTERGENIC
SBS Chr7 11828688 C-T Hetero INTERGENIC
SBS Chr8 6192896 T-C Homo INTERGENIC
SBS Chr8 6443314 T-C Homo INTERGENIC
SBS Chr8 17711709 G-A Homo INTERGENIC
SBS Chr8 17711710 C-A Homo INTERGENIC
SBS Chr9 21332908 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g184300
SBS Chr10 4054727 C-T Hetero INTERGENIC
SBS Chr10 15791469 A-G Hetero INTERGENIC
SBS Chr10 17384087 G-T Hetero INTERGENIC
SBS Chr10 23964391 G-A Hetero INTRON
SBS Chr11 2607172 G-C Hetero INTERGENIC
SBS Chr11 4979329 A-G Hetero INTERGENIC
SBS Chr11 6922760 G-A Hetero INTERGENIC
SBS Chr11 9835381 T-C Hetero INTERGENIC
SBS Chr11 9835387 G-A Hetero INTERGENIC
SBS Chr11 10420705 A-T Hetero INTRON
SBS Chr11 19090648 G-C Hetero INTERGENIC
SBS Chr11 19362147 C-T Homo NON_SYNONYMOUS_CODING OsKitaake11g150750
SBS Chr11 19525071 G-A Homo INTERGENIC
SBS Chr12 3034043 A-G Homo INTRON
SBS Chr12 6246289 G-A Hetero INTERGENIC
SBS Chr12 9611462 G-T Hetero INTERGENIC
SBS Chr12 14183221 A-T Hetero INTERGENIC
SBS Chr12 14557231 G-C Hetero INTERGENIC
SBS Chr12 15795112 G-A Hetero INTERGENIC
SBS Chr12 17440110 G-C Hetero SPLICE_SITE_REGION
SBS Chr12 23624276 A-C Hetero INTERGENIC
SBS Chr12 23672656 G-A Homo UTR_5_PRIME
SBS Chr12 23672657 G-A Homo UTR_5_PRIME

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 597380 597381 1
Deletion Chr2 12455894 12455895 1
Deletion Chr4 14180697 14180699 2
Deletion Chr9 14408820 14408822 2
Deletion Chr2 14660001 14743000 82999 5
Deletion Chr11 17086210 17086215 5
Deletion Chr12 17483255 17483257 2
Deletion Chr11 22158027 22158032 5
Deletion Chr8 22289966 22289999 33
Deletion Chr2 23282001 23294000 11999 2
Deletion Chr7 27440338 27440339 1
Deletion Chr6 28613575 28613577 2 OsKitaake06g263100
Deletion Chr5 28622342 28622358 16
Deletion Chr4 29063123 29063128 5
Deletion Chr3 30938520 30938522 2
Deletion Chr3 31189357 31189358 1
Deletion Chr2 33427044 33427045 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 29136797 29136800 2
Insertion Chr5 30012903 30012905 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 2407264 2416428

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	498210	G-A	Hetero	INTERGENIC
SBS	Chr1	1055043	C-T	Hetero	INTRON
SBS	Chr1	5835253	G-A	Hetero	INTERGENIC
SBS	Chr1	7136942	T-C	Hetero	INTERGENIC
SBS	Chr1	10859267	C-A	Hetero	INTERGENIC
SBS	Chr1	22117932	G-A	Homo	INTERGENIC
SBS	Chr1	35333452	G-A	Hetero	INTERGENIC
SBS	Chr2	12616972	G-T	Hetero	INTRON
SBS	Chr2	15598341	A-G	Hetero	INTERGENIC
SBS	Chr2	17343152	C-T	Hetero	INTERGENIC
SBS	Chr3	9990901	T-C	Hetero	INTERGENIC
SBS	Chr3	16415326	A-G	Homo	INTERGENIC
SBS	Chr3	21444275	G-T	Hetero	INTERGENIC
SBS	Chr3	23579500	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g253400
SBS	Chr3	29890188	T-G	Homo	INTERGENIC
SBS	Chr4	1475936	C-T	Hetero	INTERGENIC
SBS	Chr4	10369086	C-A	Hetero	INTERGENIC
SBS	Chr4	25280264	A-C	Homo	INTERGENIC
SBS	Chr4	25280265	G-T	Homo	INTERGENIC
SBS	Chr5	2159321	C-T	Hetero	INTERGENIC
SBS	Chr5	11434902	C-T	Hetero	INTERGENIC
SBS	Chr5	16362937	C-T	Hetero	INTERGENIC
SBS	Chr5	22616524	A-T	Homo	INTERGENIC
SBS	Chr5	23043188	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g191600
SBS	Chr6	6925693	G-T	Hetero	UTR_3_PRIME
SBS	Chr6	10249316	T-C	Hetero	INTERGENIC
SBS	Chr7	8352698	C-T	Hetero	INTERGENIC
SBS	Chr7	11112497	C-T	Hetero	INTERGENIC
SBS	Chr7	11828688	C-T	Hetero	INTERGENIC
SBS	Chr8	6192896	T-C	Homo	INTERGENIC
SBS	Chr8	6443314	T-C	Homo	INTERGENIC
SBS	Chr8	17711709	G-A	Homo	INTERGENIC
SBS	Chr8	17711710	C-A	Homo	INTERGENIC
SBS	Chr9	21332908	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g184300
SBS	Chr10	4054727	C-T	Hetero	INTERGENIC
SBS	Chr10	15791469	A-G	Hetero	INTERGENIC
SBS	Chr10	17384087	G-T	Hetero	INTERGENIC
SBS	Chr10	23964391	G-A	Hetero	INTRON
SBS	Chr11	2607172	G-C	Hetero	INTERGENIC
SBS	Chr11	4979329	A-G	Hetero	INTERGENIC
SBS	Chr11	6922760	G-A	Hetero	INTERGENIC
SBS	Chr11	9835381	T-C	Hetero	INTERGENIC
SBS	Chr11	9835387	G-A	Hetero	INTERGENIC
SBS	Chr11	10420705	A-T	Hetero	INTRON
SBS	Chr11	19090648	G-C	Hetero	INTERGENIC
SBS	Chr11	19362147	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g150750
SBS	Chr11	19525071	G-A	Homo	INTERGENIC
SBS	Chr12	3034043	A-G	Homo	INTRON
SBS	Chr12	6246289	G-A	Hetero	INTERGENIC
SBS	Chr12	9611462	G-T	Hetero	INTERGENIC
SBS	Chr12	14183221	A-T	Hetero	INTERGENIC
SBS	Chr12	14557231	G-C	Hetero	INTERGENIC
SBS	Chr12	15795112	G-A	Hetero	INTERGENIC
SBS	Chr12	17440110	G-C	Hetero	SPLICE_SITE_REGION
SBS	Chr12	23624276	A-C	Hetero	INTERGENIC
SBS	Chr12	23672656	G-A	Homo	UTR_5_PRIME
SBS	Chr12	23672657	G-A	Homo	UTR_5_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	597380	597381	1
Deletion	Chr2	12455894	12455895	1
Deletion	Chr4	14180697	14180699	2
Deletion	Chr9	14408820	14408822	2
Deletion	Chr2	14660001	14743000	82999	5
Deletion	Chr11	17086210	17086215	5
Deletion	Chr12	17483255	17483257	2
Deletion	Chr11	22158027	22158032	5
Deletion	Chr8	22289966	22289999	33
Deletion	Chr2	23282001	23294000	11999	2
Deletion	Chr7	27440338	27440339	1
Deletion	Chr6	28613575	28613577	2	OsKitaake06g263100
Deletion	Chr5	28622342	28622358	16
Deletion	Chr4	29063123	29063128	5
Deletion	Chr3	30938520	30938522	2
Deletion	Chr3	31189357	31189358	1
Deletion	Chr2	33427044	33427045	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	2407264	2416428

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes