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Mutant Information

Mutant Name	FN1521-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1521-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8484941 C-G Homo INTRON
SBS Chr1 17983837 A-C Homo NON_SYNONYMOUS_CODING OsKitaake01g182400
SBS Chr1 35554704 C-T Homo NON_SYNONYMOUS_CODING OsKitaake01g376200
SBS Chr1 35860891 T-A Homo INTERGENIC
SBS Chr1 35860900 G-C Homo INTERGENIC
SBS Chr2 11809852 G-A Homo INTRON
SBS Chr2 22416748 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 33836416 C-A Hetero INTERGENIC
SBS Chr3 3448748 C-T Hetero INTERGENIC
SBS Chr3 9139806 C-A Homo INTRON
SBS Chr3 19079116 A-T Homo INTERGENIC
SBS Chr4 2073237 C-G Hetero INTERGENIC
SBS Chr4 5203986 C-T Hetero INTERGENIC
SBS Chr4 7881842 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g040500
SBS Chr4 11621468 G-C Hetero INTERGENIC
SBS Chr4 11698114 T-G Hetero INTERGENIC
SBS Chr4 28058636 G-C Hetero INTERGENIC
SBS Chr5 12170535 C-T Hetero INTERGENIC
SBS Chr5 15542985 G-A Hetero INTERGENIC
SBS Chr5 16119421 C-A Hetero INTERGENIC
SBS Chr5 21683627 G-A Hetero INTRON
SBS Chr5 22054145 A-T Hetero INTRON
SBS Chr6 4954576 T-A Hetero INTERGENIC
SBS Chr6 25672393 G-A Hetero INTRON
SBS Chr7 9520529 G-T Hetero INTERGENIC
SBS Chr7 13656070 G-T Hetero INTERGENIC
SBS Chr7 13778705 C-A Hetero INTERGENIC
SBS Chr7 23291094 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g202600
SBS Chr7 23291120 G-A Hetero SYNONYMOUS_CODING
SBS Chr7 27278108 A-C Hetero SYNONYMOUS_CODING
SBS Chr8 5224695 A-T Hetero INTERGENIC
SBS Chr8 7010745 C-T Hetero INTERGENIC
SBS Chr8 26046612 G-A Hetero INTERGENIC
SBS Chr10 2614029 A-G Hetero INTRON
SBS Chr10 5183010 T-C Hetero INTERGENIC
SBS Chr10 5540106 T-A Hetero INTERGENIC
SBS Chr11 9585600 G-A Hetero INTERGENIC
SBS Chr11 11026130 C-A Hetero INTERGENIC
SBS Chr11 13492701 G-A Hetero INTERGENIC
SBS Chr11 22140515 C-T Hetero UTR_5_PRIME
SBS Chr12 16435050 G-T Homo INTERGENIC
SBS Chr12 17536639 G-C Homo INTERGENIC
SBS Chr12 25364562 T-A Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 3475844 3475851 7
Deletion Chr1 4896467 4896471 4
Deletion Chr7 7329001 7395000 65999 4
Deletion Chr7 8090001 8741000 650999 40
Deletion Chr12 8327979 8327981 2
Deletion Chr12 12594001 12615000 20999 5
Deletion Chr9 16169882 16169884 2
Deletion Chr2 19829908 19829909 1 OsKitaake02g193350
Deletion Chr7 23290001 23598000 307999 43
Deletion Chr2 27307200 27307202 2
Deletion Chr1 30676388 30676390 2
Deletion Chr1 33922746 33922747 1
Deletion Chr2 37087595 37087596 1
Deletion Chr1 40236002 40236009 7

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 23549922 23549925 2
Insertion Chr4 7252334 7252338 3
Insertion Chr7 21535713 21535718 4

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 7196310 7330353 OsKitaake07g081500
Inversion Chr7 7196339 7392141 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 19613009 Chr7 23597778 OsKitaake07g206900
Translocation Chr8 19613011 Chr2 17111624 OsKitaake02g172800
Translocation Chr8 24442325 Chr1 41437540
Translocation Chr8 24442638 Chr1 41437736

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8484941	C-G	Homo	INTRON
SBS	Chr1	17983837	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g182400
SBS	Chr1	35554704	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g376200
SBS	Chr1	35860891	T-A	Homo	INTERGENIC
SBS	Chr1	35860900	G-C	Homo	INTERGENIC
SBS	Chr2	11809852	G-A	Homo	INTRON
SBS	Chr2	22416748	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	33836416	C-A	Hetero	INTERGENIC
SBS	Chr3	3448748	C-T	Hetero	INTERGENIC
SBS	Chr3	9139806	C-A	Homo	INTRON
SBS	Chr3	19079116	A-T	Homo	INTERGENIC
SBS	Chr4	2073237	C-G	Hetero	INTERGENIC
SBS	Chr4	5203986	C-T	Hetero	INTERGENIC
SBS	Chr4	7881842	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g040500
SBS	Chr4	11621468	G-C	Hetero	INTERGENIC
SBS	Chr4	11698114	T-G	Hetero	INTERGENIC
SBS	Chr4	28058636	G-C	Hetero	INTERGENIC
SBS	Chr5	12170535	C-T	Hetero	INTERGENIC
SBS	Chr5	15542985	G-A	Hetero	INTERGENIC
SBS	Chr5	16119421	C-A	Hetero	INTERGENIC
SBS	Chr5	21683627	G-A	Hetero	INTRON
SBS	Chr5	22054145	A-T	Hetero	INTRON
SBS	Chr6	4954576	T-A	Hetero	INTERGENIC
SBS	Chr6	25672393	G-A	Hetero	INTRON
SBS	Chr7	9520529	G-T	Hetero	INTERGENIC
SBS	Chr7	13656070	G-T	Hetero	INTERGENIC
SBS	Chr7	13778705	C-A	Hetero	INTERGENIC
SBS	Chr7	23291094	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g202600
SBS	Chr7	23291120	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr7	27278108	A-C	Hetero	SYNONYMOUS_CODING
SBS	Chr8	5224695	A-T	Hetero	INTERGENIC
SBS	Chr8	7010745	C-T	Hetero	INTERGENIC
SBS	Chr8	26046612	G-A	Hetero	INTERGENIC
SBS	Chr10	2614029	A-G	Hetero	INTRON
SBS	Chr10	5183010	T-C	Hetero	INTERGENIC
SBS	Chr10	5540106	T-A	Hetero	INTERGENIC
SBS	Chr11	9585600	G-A	Hetero	INTERGENIC
SBS	Chr11	11026130	C-A	Hetero	INTERGENIC
SBS	Chr11	13492701	G-A	Hetero	INTERGENIC
SBS	Chr11	22140515	C-T	Hetero	UTR_5_PRIME
SBS	Chr12	16435050	G-T	Homo	INTERGENIC
SBS	Chr12	17536639	G-C	Homo	INTERGENIC
SBS	Chr12	25364562	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	3475844	3475851	7
Deletion	Chr1	4896467	4896471	4
Deletion	Chr7	7329001	7395000	65999	4
Deletion	Chr7	8090001	8741000	650999	40
Deletion	Chr12	8327979	8327981	2
Deletion	Chr12	12594001	12615000	20999	5
Deletion	Chr9	16169882	16169884	2
Deletion	Chr2	19829908	19829909	1	OsKitaake02g193350
Deletion	Chr7	23290001	23598000	307999	43
Deletion	Chr2	27307200	27307202	2
Deletion	Chr1	30676388	30676390	2
Deletion	Chr1	33922746	33922747	1
Deletion	Chr2	37087595	37087596	1
Deletion	Chr1	40236002	40236009	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	7196310	7330353	OsKitaake07g081500
Inversion	Chr7	7196339	7392141	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes