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Mutant Information

Mutant Name	FN1522-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1522-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12815050 C-T Homo INTERGENIC
SBS Chr1 30703616 C-A Hetero INTERGENIC
SBS Chr1 32823813 T-A Hetero UTR_3_PRIME
SBS Chr2 18036433 C-T Homo INTERGENIC
SBS Chr2 27710185 T-C Hetero INTERGENIC
SBS Chr3 19428939 A-C Hetero INTERGENIC
SBS Chr3 31349131 A-G Hetero INTERGENIC
SBS Chr4 11936095 C-T Homo INTERGENIC
SBS Chr4 13660233 A-C Homo INTERGENIC
SBS Chr5 12111681 T-A Homo INTERGENIC
SBS Chr5 12111682 A-T Homo INTERGENIC
SBS Chr5 13532613 A-T Homo INTRON
SBS Chr5 16525207 C-T Homo INTERGENIC
SBS Chr5 25762205 G-A Hetero INTERGENIC
SBS Chr6 429373 C-G Hetero INTRON
SBS Chr7 4648520 C-T Hetero INTERGENIC
SBS Chr7 4648523 G-A Hetero INTERGENIC
SBS Chr7 8034043 G-C Hetero INTERGENIC
SBS Chr7 16615436 C-T Hetero INTERGENIC
SBS Chr8 20545323 C-T Homo INTERGENIC
SBS Chr9 22316910 A-T Homo INTERGENIC
SBS Chr10 16527681 T-A Homo INTERGENIC
SBS Chr10 20294128 A-T Homo INTRON
SBS Chr11 5006156 C-T Hetero INTERGENIC
SBS Chr12 10381823 G-C Hetero INTRON

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1220001 1242000 21999 5
Deletion Chr5 1363001 1383000 19999 OsKitaake05g017100
Deletion Chr4 2671278 2671283 5
Deletion Chr11 2998935 2998938 3 OsKitaake11g042400
Deletion Chr10 3224850 3224861 11
Deletion Chr2 5844743 5844744 1
Deletion Chr7 8034795 8034798 3
Deletion Chr3 8138232 8138233 1
Deletion Chr1 9152426 9152428 2
Deletion Chr5 9360001 9377000 16999
Deletion Chr1 9642001 9660000 17999 2
Deletion Chr7 11073001 11088000 14999 OsKitaake07g104332
Deletion Chr11 11146371 11146373 2
Deletion Chr12 12591001 12613000 21999 5
Deletion Chr5 14338718 14338722 4
Deletion Chr10 15402833 15402836 3
Deletion Chr10 15891676 15891677 1
Deletion Chr5 16565355 16565362 7
Deletion Chr1 23649922 23649923 1
Deletion Chr4 24460001 24474000 13999
Deletion Chr2 26625985 26625997 12
Deletion Chr2 28093291 28093304 13
Deletion Chr3 28578001 28596000 17999 OsKitaake03g296500
Deletion Chr3 29007575 29007579 4

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 4661163 4661166 2
Insertion Chr1 41794213 41794216 2
Insertion Chr6 2147212 2147215 2
Insertion Chr6 16647037 16647040 2
Insertion Chr6 27141261 27141264 2
Insertion Chr8 11143320 11143322 1
Insertion Chr11 10035939 10035943 3
Insertion Chr12 8903649 8903652 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 13486331 13503069
Inversion Chr5 13486337 13503087
Inversion Chr2 35567637 36563037 OsKitaake02g388800
Inversion Chr2 35730362 36563034 OsKitaake02g388800

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 2718500 Chr1 7363896 OsKitaake10g022300
Translocation Chr10 2734870 Chr1 7363889

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12815050	C-T	Homo	INTERGENIC
SBS	Chr1	30703616	C-A	Hetero	INTERGENIC
SBS	Chr1	32823813	T-A	Hetero	UTR_3_PRIME
SBS	Chr2	18036433	C-T	Homo	INTERGENIC
SBS	Chr2	27710185	T-C	Hetero	INTERGENIC
SBS	Chr3	19428939	A-C	Hetero	INTERGENIC
SBS	Chr3	31349131	A-G	Hetero	INTERGENIC
SBS	Chr4	11936095	C-T	Homo	INTERGENIC
SBS	Chr4	13660233	A-C	Homo	INTERGENIC
SBS	Chr5	12111681	T-A	Homo	INTERGENIC
SBS	Chr5	12111682	A-T	Homo	INTERGENIC
SBS	Chr5	13532613	A-T	Homo	INTRON
SBS	Chr5	16525207	C-T	Homo	INTERGENIC
SBS	Chr5	25762205	G-A	Hetero	INTERGENIC
SBS	Chr6	429373	C-G	Hetero	INTRON
SBS	Chr7	4648520	C-T	Hetero	INTERGENIC
SBS	Chr7	4648523	G-A	Hetero	INTERGENIC
SBS	Chr7	8034043	G-C	Hetero	INTERGENIC
SBS	Chr7	16615436	C-T	Hetero	INTERGENIC
SBS	Chr8	20545323	C-T	Homo	INTERGENIC
SBS	Chr9	22316910	A-T	Homo	INTERGENIC
SBS	Chr10	16527681	T-A	Homo	INTERGENIC
SBS	Chr10	20294128	A-T	Homo	INTRON
SBS	Chr11	5006156	C-T	Hetero	INTERGENIC
SBS	Chr12	10381823	G-C	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1220001	1242000	21999	5
Deletion	Chr5	1363001	1383000	19999	OsKitaake05g017100
Deletion	Chr4	2671278	2671283	5
Deletion	Chr11	2998935	2998938	3	OsKitaake11g042400
Deletion	Chr10	3224850	3224861	11
Deletion	Chr2	5844743	5844744	1
Deletion	Chr7	8034795	8034798	3
Deletion	Chr3	8138232	8138233	1
Deletion	Chr1	9152426	9152428	2
Deletion	Chr5	9360001	9377000	16999
Deletion	Chr1	9642001	9660000	17999	2
Deletion	Chr7	11073001	11088000	14999	OsKitaake07g104332
Deletion	Chr11	11146371	11146373	2
Deletion	Chr12	12591001	12613000	21999	5
Deletion	Chr5	14338718	14338722	4
Deletion	Chr10	15402833	15402836	3
Deletion	Chr10	15891676	15891677	1
Deletion	Chr5	16565355	16565362	7
Deletion	Chr1	23649922	23649923	1
Deletion	Chr4	24460001	24474000	13999
Deletion	Chr2	26625985	26625997	12
Deletion	Chr2	28093291	28093304	13
Deletion	Chr3	28578001	28596000	17999	OsKitaake03g296500
Deletion	Chr3	29007575	29007579	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	13486331	13503069
Inversion	Chr5	13486337	13503087
Inversion	Chr2	35567637	36563037	OsKitaake02g388800
Inversion	Chr2	35730362	36563034	OsKitaake02g388800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes