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Mutant Information

Mutant Name	FN1523-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1523-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2619266 A-G Hetero INTRON
SBS Chr1 7526601 A-G Hetero INTERGENIC
SBS Chr1 24935853 C-T Homo INTERGENIC
SBS Chr1 27945045 T-A Homo INTERGENIC
SBS Chr1 37039495 G-C Homo INTERGENIC
SBS Chr3 6939873 A-G Homo NON_SYNONYMOUS_CODING OsKitaake03g097800
SBS Chr3 16053190 T-G Hetero INTERGENIC
SBS Chr3 31305442 C-T Homo INTRON
SBS Chr3 31960231 C-T Hetero INTRON
SBS Chr4 17092336 A-G Hetero INTERGENIC
SBS Chr4 22364143 T-C Hetero SYNONYMOUS_CODING
SBS Chr4 28369707 T-A Hetero INTERGENIC
SBS Chr6 5174246 G-A Hetero INTERGENIC
SBS Chr6 5698708 G-C Hetero INTERGENIC
SBS Chr7 2539155 T-A Homo INTERGENIC
SBS Chr7 3959065 G-A Homo INTERGENIC
SBS Chr7 21340939 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g177200
SBS Chr8 14027759 G-C Hetero INTERGENIC
SBS Chr8 25667308 A-T Homo INTERGENIC
SBS Chr9 491113 C-T Hetero INTERGENIC
SBS Chr9 491115 G-T Hetero INTERGENIC
SBS Chr9 491116 C-T Hetero INTERGENIC
SBS Chr9 7236378 C-T Hetero INTERGENIC
SBS Chr11 4405627 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g058900
SBS Chr11 20032508 A-T Hetero INTERGENIC
SBS Chr12 4487323 A-T Hetero INTERGENIC
SBS Chr12 18907598 G-T Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 4269808 4269822 14
Deletion Chr12 8597430 8597432 2
Deletion Chr12 11718044 11718045 1
Deletion Chr3 12941400 12941407 7
Deletion Chr2 14989086 14989095 9
Deletion Chr12 17665001 17708000 42999 4
Deletion Chr2 19002905 19002910 5
Deletion Chr4 21275313 21275317 4
Deletion Chr11 22627226 22627251 25
Deletion Chr6 24479545 24479548 3
Deletion Chr11 24806268 24806273 5
Deletion Chr5 27966088 27966096 8
Deletion Chr8 28418718 28418719 1
Deletion Chr3 34773115 34773121 6

Insertions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 31722588 31722590 1
Insertion Chr5 5552618 5552621 2
Insertion Chr5 14569030 14569033 2
Insertion Chr12 19120522 19120525 2
Insertion Chr2 27446171 27446176 4 OsKitaake02g275800
Insertion Chr5 30215229 30215231 1
Insertion Chr5 30215938 30215946 7
Insertion Chr12 11417913 11417915 1
Insertion Chr12 11658594 11658596 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 956590 1658188 2
Inversion Chr1 958109 1658379 OsKitaake01g020200
Inversion Chr4 20904764 21064930
Inversion Chr4 20904816 21064944

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2619266	A-G	Hetero	INTRON
SBS	Chr1	7526601	A-G	Hetero	INTERGENIC
SBS	Chr1	24935853	C-T	Homo	INTERGENIC
SBS	Chr1	27945045	T-A	Homo	INTERGENIC
SBS	Chr1	37039495	G-C	Homo	INTERGENIC
SBS	Chr3	6939873	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g097800
SBS	Chr3	16053190	T-G	Hetero	INTERGENIC
SBS	Chr3	31305442	C-T	Homo	INTRON
SBS	Chr3	31960231	C-T	Hetero	INTRON
SBS	Chr4	17092336	A-G	Hetero	INTERGENIC
SBS	Chr4	22364143	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr4	28369707	T-A	Hetero	INTERGENIC
SBS	Chr6	5174246	G-A	Hetero	INTERGENIC
SBS	Chr6	5698708	G-C	Hetero	INTERGENIC
SBS	Chr7	2539155	T-A	Homo	INTERGENIC
SBS	Chr7	3959065	G-A	Homo	INTERGENIC
SBS	Chr7	21340939	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g177200
SBS	Chr8	14027759	G-C	Hetero	INTERGENIC
SBS	Chr8	25667308	A-T	Homo	INTERGENIC
SBS	Chr9	491113	C-T	Hetero	INTERGENIC
SBS	Chr9	491115	G-T	Hetero	INTERGENIC
SBS	Chr9	491116	C-T	Hetero	INTERGENIC
SBS	Chr9	7236378	C-T	Hetero	INTERGENIC
SBS	Chr11	4405627	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g058900
SBS	Chr11	20032508	A-T	Hetero	INTERGENIC
SBS	Chr12	4487323	A-T	Hetero	INTERGENIC
SBS	Chr12	18907598	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	4269808	4269822	14
Deletion	Chr12	8597430	8597432	2
Deletion	Chr12	11718044	11718045	1
Deletion	Chr3	12941400	12941407	7
Deletion	Chr2	14989086	14989095	9
Deletion	Chr12	17665001	17708000	42999	4
Deletion	Chr2	19002905	19002910	5
Deletion	Chr4	21275313	21275317	4
Deletion	Chr11	22627226	22627251	25
Deletion	Chr6	24479545	24479548	3
Deletion	Chr11	24806268	24806273	5
Deletion	Chr5	27966088	27966096	8
Deletion	Chr8	28418718	28418719	1
Deletion	Chr3	34773115	34773121	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	956590	1658188	2
Inversion	Chr1	958109	1658379	OsKitaake01g020200
Inversion	Chr4	20904764	21064930
Inversion	Chr4	20904816	21064944

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes