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Mutant Information

Mutant Name	FN1526-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1526-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2697507 C-A Hetero INTRON
SBS Chr1 2706852 G-T Hetero INTERGENIC
SBS Chr1 2726996 G-A Hetero INTRON
SBS Chr1 32225977 A-T Hetero INTERGENIC
SBS Chr1 35903327 C-G Hetero START_GAINED
SBS Chr2 36040219 C-T Homo INTERGENIC
SBS Chr3 26764525 C-A Hetero INTERGENIC
SBS Chr4 15732002 T-C Hetero INTERGENIC
SBS Chr5 18203268 G-A Homo INTERGENIC
SBS Chr5 19630734 A-G Homo INTERGENIC
SBS Chr6 2466160 C-T Homo INTERGENIC
SBS Chr7 15986126 A-G Hetero INTERGENIC
SBS Chr7 23128897 C-T Hetero INTERGENIC
SBS Chr7 24125000 A-T Hetero INTERGENIC
SBS Chr8 18046416 A-T Homo INTERGENIC
SBS Chr9 1359525 A-T Hetero INTERGENIC
SBS Chr10 1287933 G-T Hetero INTERGENIC
SBS Chr10 1287934 A-T Hetero INTERGENIC
SBS Chr10 16823266 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g114900
SBS Chr11 15378761 G-A Homo INTERGENIC
SBS Chr11 16458541 A-G Homo INTRON
SBS Chr11 17679873 G-A Homo INTRON
SBS Chr12 1754965 C-T Homo INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 3640001 3678000 37999 3
Deletion Chr5 4070341 4070343 2
Deletion Chr5 4159571 4159572 1
Deletion Chr11 4208452 4208461 9
Deletion Chr12 5760001 5798000 37999 2
Deletion Chr7 6549016 6549017 1
Deletion Chr5 10772071 10772074 3
Deletion Chr5 12619119 12619121 2
Deletion Chr7 13726001 13730000 3999
Deletion Chr9 15554838 15554935 97
Deletion Chr11 17344718 17344721 3
Deletion Chr9 18446498 18446500 2
Deletion Chr8 25651384 25651388 4

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 12032838 12032841 2
Insertion Chr3 13053394 13053399 4
Insertion Chr8 16521293 16521296 2
Insertion Chr8 22867861 22867865 3
Insertion Chr10 10006463 10006466 2
Insertion Chr12 8645212 8645214 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 9418521 9526461 OsKitaake08g089800
Inversion Chr8 9418543 9526468 OsKitaake08g089800

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 20341016 Chr2 34685483
Translocation Chr11 20341056 Chr2 34687206 OsKitaake02g361450

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2697507	C-A	Hetero	INTRON
SBS	Chr1	2706852	G-T	Hetero	INTERGENIC
SBS	Chr1	2726996	G-A	Hetero	INTRON
SBS	Chr1	32225977	A-T	Hetero	INTERGENIC
SBS	Chr1	35903327	C-G	Hetero	START_GAINED
SBS	Chr2	36040219	C-T	Homo	INTERGENIC
SBS	Chr3	26764525	C-A	Hetero	INTERGENIC
SBS	Chr4	15732002	T-C	Hetero	INTERGENIC
SBS	Chr5	18203268	G-A	Homo	INTERGENIC
SBS	Chr5	19630734	A-G	Homo	INTERGENIC
SBS	Chr6	2466160	C-T	Homo	INTERGENIC
SBS	Chr7	15986126	A-G	Hetero	INTERGENIC
SBS	Chr7	23128897	C-T	Hetero	INTERGENIC
SBS	Chr7	24125000	A-T	Hetero	INTERGENIC
SBS	Chr8	18046416	A-T	Homo	INTERGENIC
SBS	Chr9	1359525	A-T	Hetero	INTERGENIC
SBS	Chr10	1287933	G-T	Hetero	INTERGENIC
SBS	Chr10	1287934	A-T	Hetero	INTERGENIC
SBS	Chr10	16823266	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g114900
SBS	Chr11	15378761	G-A	Homo	INTERGENIC
SBS	Chr11	16458541	A-G	Homo	INTRON
SBS	Chr11	17679873	G-A	Homo	INTRON
SBS	Chr12	1754965	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	3640001	3678000	37999	3
Deletion	Chr5	4070341	4070343	2
Deletion	Chr5	4159571	4159572	1
Deletion	Chr11	4208452	4208461	9
Deletion	Chr12	5760001	5798000	37999	2
Deletion	Chr7	6549016	6549017	1
Deletion	Chr5	10772071	10772074	3
Deletion	Chr5	12619119	12619121	2
Deletion	Chr7	13726001	13730000	3999
Deletion	Chr9	15554838	15554935	97
Deletion	Chr11	17344718	17344721	3
Deletion	Chr9	18446498	18446500	2
Deletion	Chr8	25651384	25651388	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	9418521	9526461	OsKitaake08g089800
Inversion	Chr8	9418543	9526468	OsKitaake08g089800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes