Search Kitaake

Mutant Information

Mutant Name	FN1527-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1527-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6049734 G-A Homo SYNONYMOUS_CODING
SBS Chr1 12425078 T-A Homo INTRON
SBS Chr1 12425095 T-A Homo SPLICE_SITE_REGION
SBS Chr1 16974808 T-C Homo INTERGENIC
SBS Chr1 17727975 G-A Homo INTERGENIC
SBS Chr1 17727976 T-A Homo INTERGENIC
SBS Chr1 29790150 G-A Homo INTERGENIC
SBS Chr1 30778484 C-A Homo INTERGENIC
SBS Chr1 32625472 C-T Homo INTERGENIC
SBS Chr2 15199570 T-A Hetero INTERGENIC
SBS Chr2 24624447 T-G Hetero UTR_3_PRIME
SBS Chr2 24635689 C-T Hetero INTRON
SBS Chr3 19935171 C-T Homo INTERGENIC
SBS Chr4 4490593 G-T Homo INTERGENIC
SBS Chr4 5533307 G-A Homo INTERGENIC
SBS Chr4 13901101 C-T Homo INTERGENIC
SBS Chr4 18916496 G-T Homo UTR_3_PRIME
SBS Chr5 2019116 T-A Hetero UTR_3_PRIME
SBS Chr5 10090731 A-T Homo INTERGENIC
SBS Chr5 22021003 G-A Hetero INTERGENIC
SBS Chr6 9737291 G-A Homo INTERGENIC
SBS Chr7 15565336 G-A Hetero INTERGENIC
SBS Chr7 29404728 C-T Homo INTERGENIC
SBS Chr7 29404729 A-T Homo INTERGENIC
SBS Chr8 1666540 A-T Hetero INTRON
SBS Chr8 11701929 T-A Hetero INTERGENIC
SBS Chr10 2022670 C-T Homo INTRON
SBS Chr10 13449503 G-A Homo INTERGENIC
SBS Chr11 14688066 G-A Homo INTERGENIC
SBS Chr11 16808153 C-A Homo INTERGENIC
SBS Chr12 9911337 G-T Hetero INTERGENIC
SBS Chr12 12466202 T-C Hetero INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 4651154 4651155 1 OsKitaake02g064300
Deletion Chr6 5698794 5698798 4
Deletion Chr2 8243654 8243665 11
Deletion Chr11 8439612 8439614 2
Deletion Chr4 11011298 11011309 11
Deletion Chr1 11779071 11779072 1
Deletion Chr12 26505219 26505221 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 42367388 42367391 2
Insertion Chr7 3052855 3052858 2
Insertion Chr10 5007816 5007819 2
Insertion Chr3 13799627 13799629 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6049734	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr1	12425078	T-A	Homo	INTRON
SBS	Chr1	12425095	T-A	Homo	SPLICE_SITE_REGION
SBS	Chr1	16974808	T-C	Homo	INTERGENIC
SBS	Chr1	17727975	G-A	Homo	INTERGENIC
SBS	Chr1	17727976	T-A	Homo	INTERGENIC
SBS	Chr1	29790150	G-A	Homo	INTERGENIC
SBS	Chr1	30778484	C-A	Homo	INTERGENIC
SBS	Chr1	32625472	C-T	Homo	INTERGENIC
SBS	Chr2	15199570	T-A	Hetero	INTERGENIC
SBS	Chr2	24624447	T-G	Hetero	UTR_3_PRIME
SBS	Chr2	24635689	C-T	Hetero	INTRON
SBS	Chr3	19935171	C-T	Homo	INTERGENIC
SBS	Chr4	4490593	G-T	Homo	INTERGENIC
SBS	Chr4	5533307	G-A	Homo	INTERGENIC
SBS	Chr4	13901101	C-T	Homo	INTERGENIC
SBS	Chr4	18916496	G-T	Homo	UTR_3_PRIME
SBS	Chr5	2019116	T-A	Hetero	UTR_3_PRIME
SBS	Chr5	10090731	A-T	Homo	INTERGENIC
SBS	Chr5	22021003	G-A	Hetero	INTERGENIC
SBS	Chr6	9737291	G-A	Homo	INTERGENIC
SBS	Chr7	15565336	G-A	Hetero	INTERGENIC
SBS	Chr7	29404728	C-T	Homo	INTERGENIC
SBS	Chr7	29404729	A-T	Homo	INTERGENIC
SBS	Chr8	1666540	A-T	Hetero	INTRON
SBS	Chr8	11701929	T-A	Hetero	INTERGENIC
SBS	Chr10	2022670	C-T	Homo	INTRON
SBS	Chr10	13449503	G-A	Homo	INTERGENIC
SBS	Chr11	14688066	G-A	Homo	INTERGENIC
SBS	Chr11	16808153	C-A	Homo	INTERGENIC
SBS	Chr12	9911337	G-T	Hetero	INTERGENIC
SBS	Chr12	12466202	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	4651154	4651155	1	OsKitaake02g064300
Deletion	Chr6	5698794	5698798	4
Deletion	Chr2	8243654	8243665	11
Deletion	Chr11	8439612	8439614	2
Deletion	Chr4	11011298	11011309	11
Deletion	Chr1	11779071	11779072	1
Deletion	Chr12	26505219	26505221	2

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes