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Mutant Information

Mutant Name	FN1528-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1528-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (30.76% Albino) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 24641050 C-T Homo INTERGENIC
SBS Chr1 32756260 C-T Homo INTERGENIC
SBS Chr1 34634445 G-T Homo INTERGENIC
SBS Chr2 919252 A-T Homo INTRON
SBS Chr2 12288768 T-C Hetero INTERGENIC
SBS Chr2 27825502 G-A Homo INTERGENIC
SBS Chr2 30044295 T-C Hetero INTERGENIC
SBS Chr3 7051890 A-C Hetero INTERGENIC
SBS Chr3 9446167 A-C Homo INTERGENIC
SBS Chr3 11869950 C-T Hetero INTRON
SBS Chr3 31159517 G-C Hetero INTRON
SBS Chr3 33601862 C-T Hetero INTERGENIC
SBS Chr4 4603275 A-T Hetero INTERGENIC
SBS Chr4 18246072 A-T Homo INTERGENIC
SBS Chr4 22918737 C-T Homo INTERGENIC
SBS Chr4 29988050 G-A Hetero INTERGENIC
SBS Chr5 7479061 T-A Hetero INTERGENIC
SBS Chr5 13280028 C-G Hetero INTERGENIC
SBS Chr5 14131203 C-T Hetero INTERGENIC
SBS Chr6 3731027 C-T Hetero UTR_5_PRIME
SBS Chr6 12708812 C-T Homo INTERGENIC
SBS Chr6 12708818 A-G Homo INTERGENIC
SBS Chr8 5082513 T-A Hetero INTERGENIC
SBS Chr8 14425667 T-C Hetero INTERGENIC
SBS Chr9 11814129 C-T Homo INTERGENIC
SBS Chr10 11235231 C-T Hetero INTERGENIC
SBS Chr10 19131636 T-G Hetero INTERGENIC
SBS Chr10 20654157 A-T Hetero INTERGENIC
SBS Chr12 9357866 T-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 3168627 3168628 1
Deletion Chr1 8401837 8401849 12
Deletion Chr6 9539295 9539299 4
Deletion Chr1 12737871 12737879 8
Deletion Chr3 18193984 18193987 3
Deletion Chr10 18741001 18772000 30999 3
Deletion Chr5 20159001 20177000 17999 2
Deletion Chr2 20724574 20724581 7
Deletion Chr4 20830399 20830409 10
Deletion Chr4 22954606 22954612 6
Deletion Chr7 23781122 23781125 3
Deletion Chr7 25328391 25328393 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 28603877 28603880 2
Insertion Chr7 11037064 11037067 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 18745598 18897283
Inversion Chr10 18770445 18897289

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 14394290 Chr1 26784385
Translocation Chr11 15955496 Chr5 20159540 OsKitaake05g160600
Translocation Chr11 15955531 Chr5 20160431 OsKitaake05g160600
Translocation Chr6 18458958 Chr2 10249382
Translocation Chr6 18458963 Chr2 10214929

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24641050	C-T	Homo	INTERGENIC
SBS	Chr1	32756260	C-T	Homo	INTERGENIC
SBS	Chr1	34634445	G-T	Homo	INTERGENIC
SBS	Chr2	919252	A-T	Homo	INTRON
SBS	Chr2	12288768	T-C	Hetero	INTERGENIC
SBS	Chr2	27825502	G-A	Homo	INTERGENIC
SBS	Chr2	30044295	T-C	Hetero	INTERGENIC
SBS	Chr3	7051890	A-C	Hetero	INTERGENIC
SBS	Chr3	9446167	A-C	Homo	INTERGENIC
SBS	Chr3	11869950	C-T	Hetero	INTRON
SBS	Chr3	31159517	G-C	Hetero	INTRON
SBS	Chr3	33601862	C-T	Hetero	INTERGENIC
SBS	Chr4	4603275	A-T	Hetero	INTERGENIC
SBS	Chr4	18246072	A-T	Homo	INTERGENIC
SBS	Chr4	22918737	C-T	Homo	INTERGENIC
SBS	Chr4	29988050	G-A	Hetero	INTERGENIC
SBS	Chr5	7479061	T-A	Hetero	INTERGENIC
SBS	Chr5	13280028	C-G	Hetero	INTERGENIC
SBS	Chr5	14131203	C-T	Hetero	INTERGENIC
SBS	Chr6	3731027	C-T	Hetero	UTR_5_PRIME
SBS	Chr6	12708812	C-T	Homo	INTERGENIC
SBS	Chr6	12708818	A-G	Homo	INTERGENIC
SBS	Chr8	5082513	T-A	Hetero	INTERGENIC
SBS	Chr8	14425667	T-C	Hetero	INTERGENIC
SBS	Chr9	11814129	C-T	Homo	INTERGENIC
SBS	Chr10	11235231	C-T	Hetero	INTERGENIC
SBS	Chr10	19131636	T-G	Hetero	INTERGENIC
SBS	Chr10	20654157	A-T	Hetero	INTERGENIC
SBS	Chr12	9357866	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	3168627	3168628	1
Deletion	Chr1	8401837	8401849	12
Deletion	Chr6	9539295	9539299	4
Deletion	Chr1	12737871	12737879	8
Deletion	Chr3	18193984	18193987	3
Deletion	Chr10	18741001	18772000	30999	3
Deletion	Chr5	20159001	20177000	17999	2
Deletion	Chr2	20724574	20724581	7
Deletion	Chr4	20830399	20830409	10
Deletion	Chr4	22954606	22954612	6
Deletion	Chr7	23781122	23781125	3
Deletion	Chr7	25328391	25328393	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	18745598	18897283
Inversion	Chr10	18770445	18897289

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes