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Mutant Information

Mutant Name	FN1531-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1531-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1434964 C-A Homo INTERGENIC
SBS Chr2 7480419 T-C Hetero INTERGENIC
SBS Chr2 32957976 C-A Hetero INTRON
SBS Chr2 36410094 T-G Hetero INTERGENIC
SBS Chr3 15469558 T-C Hetero INTERGENIC
SBS Chr3 16149038 A-T Hetero INTRON
SBS Chr3 16546623 T-C Homo INTERGENIC
SBS Chr3 20979495 G-A Hetero INTERGENIC
SBS Chr3 22444771 G-A Hetero INTERGENIC
SBS Chr3 33644885 C-T Homo INTERGENIC
SBS Chr4 28978370 T-C Homo INTRON
SBS Chr4 35190407 T-C Homo INTERGENIC
SBS Chr5 19508166 A-G Hetero INTERGENIC
SBS Chr6 2663243 C-T Homo INTERGENIC
SBS Chr7 1584021 T-C Homo INTERGENIC
SBS Chr7 9657384 T-C Homo INTERGENIC
SBS Chr7 14308601 C-A Homo NON_SYNONYMOUS_CODING OsKitaake07g123400
SBS Chr7 15748242 G-T Homo INTRON
SBS Chr8 13111596 C-A Homo INTRON
SBS Chr8 28176630 T-A Hetero INTERGENIC
SBS Chr9 1031818 C-G Hetero INTERGENIC
SBS Chr9 14208404 G-A Hetero INTERGENIC
SBS Chr10 19712447 C-T Homo NON_SYNONYMOUS_CODING OsKitaake10g146000
SBS Chr11 8953486 C-T Hetero INTRON
SBS Chr12 1981510 C-T Homo INTERGENIC
SBS Chr12 3385433 T-C Homo UTR_3_PRIME
SBS Chr12 12221380 C-T Hetero INTERGENIC
SBS Chr12 19289038 A-T Hetero INTERGENIC
SBS Chr12 19289039 A-T Hetero INTERGENIC
SBS Chr12 24660431 T-A Hetero INTERGENIC

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 7960284 7960288 4
Deletion Chr1 13956728 13956729 1
Deletion Chr1 18014635 18014720 85
Deletion Chr8 23179485 23179595 110
Deletion Chr3 25935725 25935871 146
Deletion Chr3 29696680 29696682 2 OsKitaake03g310100

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 14414635 14414638 2
Insertion Chr3 8671974 8671978 3

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 2803982 3181850 2

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 20928882 Chr3 3181924 OsKitaake03g044700
Translocation Chr10 21150632 Chr6 10321819
Translocation Chr10 21150637 Chr6 10305019

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1434964	C-A	Homo	INTERGENIC
SBS	Chr2	7480419	T-C	Hetero	INTERGENIC
SBS	Chr2	32957976	C-A	Hetero	INTRON
SBS	Chr2	36410094	T-G	Hetero	INTERGENIC
SBS	Chr3	15469558	T-C	Hetero	INTERGENIC
SBS	Chr3	16149038	A-T	Hetero	INTRON
SBS	Chr3	16546623	T-C	Homo	INTERGENIC
SBS	Chr3	20979495	G-A	Hetero	INTERGENIC
SBS	Chr3	22444771	G-A	Hetero	INTERGENIC
SBS	Chr3	33644885	C-T	Homo	INTERGENIC
SBS	Chr4	28978370	T-C	Homo	INTRON
SBS	Chr4	35190407	T-C	Homo	INTERGENIC
SBS	Chr5	19508166	A-G	Hetero	INTERGENIC
SBS	Chr6	2663243	C-T	Homo	INTERGENIC
SBS	Chr7	1584021	T-C	Homo	INTERGENIC
SBS	Chr7	9657384	T-C	Homo	INTERGENIC
SBS	Chr7	14308601	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g123400
SBS	Chr7	15748242	G-T	Homo	INTRON
SBS	Chr8	13111596	C-A	Homo	INTRON
SBS	Chr8	28176630	T-A	Hetero	INTERGENIC
SBS	Chr9	1031818	C-G	Hetero	INTERGENIC
SBS	Chr9	14208404	G-A	Hetero	INTERGENIC
SBS	Chr10	19712447	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g146000
SBS	Chr11	8953486	C-T	Hetero	INTRON
SBS	Chr12	1981510	C-T	Homo	INTERGENIC
SBS	Chr12	3385433	T-C	Homo	UTR_3_PRIME
SBS	Chr12	12221380	C-T	Hetero	INTERGENIC
SBS	Chr12	19289038	A-T	Hetero	INTERGENIC
SBS	Chr12	19289039	A-T	Hetero	INTERGENIC
SBS	Chr12	24660431	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	7960284	7960288	4
Deletion	Chr1	13956728	13956729	1
Deletion	Chr1	18014635	18014720	85
Deletion	Chr8	23179485	23179595	110
Deletion	Chr3	25935725	25935871	146
Deletion	Chr3	29696680	29696682	2	OsKitaake03g310100

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	2803982	3181850	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes