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Mutant Information

Mutant Name	FN1532-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1532-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12905736 G-A Hetero UTR_5_PRIME
SBS Chr1 21980311 G-A Homo INTERGENIC
SBS Chr1 42367545 G-C Hetero INTERGENIC
SBS Chr2 3940539 T-A Hetero INTERGENIC
SBS Chr2 10270367 G-A Homo INTERGENIC
SBS Chr2 30379735 C-T Hetero UTR_3_PRIME
SBS Chr2 31449679 G-A Homo INTERGENIC
SBS Chr3 4920551 T-C Hetero INTRON
SBS Chr3 23589822 A-T Hetero INTERGENIC
SBS Chr4 7998387 C-A Hetero INTERGENIC
SBS Chr4 8646946 T-A Homo NON_SYNONYMOUS_CODING OsKitaake04g044100
SBS Chr4 9360332 G-A Homo INTERGENIC
SBS Chr4 13643885 T-A Homo INTRON
SBS Chr4 16329550 C-T Hetero INTERGENIC
SBS Chr4 26527325 G-T Homo INTERGENIC
SBS Chr5 20940225 G-A Hetero INTRON
SBS Chr6 8335708 A-T Hetero INTERGENIC
SBS Chr6 9885634 G-A Hetero INTERGENIC
SBS Chr6 24907751 A-C Hetero INTERGENIC
SBS Chr7 683792 C-A Hetero INTERGENIC
SBS Chr7 9578491 C-T Hetero INTERGENIC
SBS Chr8 3106686 G-T Homo INTRON
SBS Chr8 12057633 A-T Hetero INTERGENIC
SBS Chr8 19113755 C-A Hetero INTERGENIC
SBS Chr8 21462202 A-G Hetero INTERGENIC
SBS Chr9 17268748 C-T Hetero INTERGENIC
SBS Chr10 5525748 T-C Homo NON_SYNONYMOUS_CODING OsKitaake10g038400
SBS Chr10 6296957 C-T Hetero INTERGENIC
SBS Chr11 11676102 T-A Hetero INTERGENIC
SBS Chr12 21379113 T-G Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 85068 85076 8
Deletion Chr8 2794759 2795089 330
Deletion Chr6 4946816 4946828 12
Deletion Chr5 6037433 6037434 1
Deletion Chr7 6472814 6472815 1
Deletion Chr6 6929282 6929288 6
Deletion Chr2 7737028 7737030 2
Deletion Chr5 21594349 21594359 10
Deletion Chr3 25277702 25277706 4
Deletion Chr4 25979179 25979191 12
Deletion Chr3 28446936 28446937 1 OsKitaake03g294600
Deletion Chr3 35341607 35341608 1
Deletion Chr2 35888001 35900000 11999 OsKitaake02g378100

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 22848895 22848898 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12905736	G-A	Hetero	UTR_5_PRIME
SBS	Chr1	21980311	G-A	Homo	INTERGENIC
SBS	Chr1	42367545	G-C	Hetero	INTERGENIC
SBS	Chr2	3940539	T-A	Hetero	INTERGENIC
SBS	Chr2	10270367	G-A	Homo	INTERGENIC
SBS	Chr2	30379735	C-T	Hetero	UTR_3_PRIME
SBS	Chr2	31449679	G-A	Homo	INTERGENIC
SBS	Chr3	4920551	T-C	Hetero	INTRON
SBS	Chr3	23589822	A-T	Hetero	INTERGENIC
SBS	Chr4	7998387	C-A	Hetero	INTERGENIC
SBS	Chr4	8646946	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g044100
SBS	Chr4	9360332	G-A	Homo	INTERGENIC
SBS	Chr4	13643885	T-A	Homo	INTRON
SBS	Chr4	16329550	C-T	Hetero	INTERGENIC
SBS	Chr4	26527325	G-T	Homo	INTERGENIC
SBS	Chr5	20940225	G-A	Hetero	INTRON
SBS	Chr6	8335708	A-T	Hetero	INTERGENIC
SBS	Chr6	9885634	G-A	Hetero	INTERGENIC
SBS	Chr6	24907751	A-C	Hetero	INTERGENIC
SBS	Chr7	683792	C-A	Hetero	INTERGENIC
SBS	Chr7	9578491	C-T	Hetero	INTERGENIC
SBS	Chr8	3106686	G-T	Homo	INTRON
SBS	Chr8	12057633	A-T	Hetero	INTERGENIC
SBS	Chr8	19113755	C-A	Hetero	INTERGENIC
SBS	Chr8	21462202	A-G	Hetero	INTERGENIC
SBS	Chr9	17268748	C-T	Hetero	INTERGENIC
SBS	Chr10	5525748	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g038400
SBS	Chr10	6296957	C-T	Hetero	INTERGENIC
SBS	Chr11	11676102	T-A	Hetero	INTERGENIC
SBS	Chr12	21379113	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	85068	85076	8
Deletion	Chr8	2794759	2795089	330
Deletion	Chr6	4946816	4946828	12
Deletion	Chr5	6037433	6037434	1
Deletion	Chr7	6472814	6472815	1
Deletion	Chr6	6929282	6929288	6
Deletion	Chr2	7737028	7737030	2
Deletion	Chr5	21594349	21594359	10
Deletion	Chr3	25277702	25277706	4
Deletion	Chr4	25979179	25979191	12
Deletion	Chr3	28446936	28446937	1	OsKitaake03g294600
Deletion	Chr3	35341607	35341608	1
Deletion	Chr2	35888001	35900000	11999	OsKitaake02g378100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes