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Mutant Information

Mutant Name	FN1533-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1533-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9997217 C-T Hetero INTERGENIC
SBS Chr1 13604175 G-A Homo INTERGENIC
SBS Chr1 13604177 G-A Homo INTERGENIC
SBS Chr1 23225585 T-A Hetero INTERGENIC
SBS Chr1 23225586 A-C Hetero INTERGENIC
SBS Chr1 26857192 G-A Homo INTERGENIC
SBS Chr1 41334001 T-A Hetero INTERGENIC
SBS Chr1 43142841 A-T Hetero INTERGENIC
SBS Chr2 24238119 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g239500
SBS Chr2 36324956 A-T Hetero INTERGENIC
SBS Chr3 28689236 C-T Hetero INTERGENIC
SBS Chr4 5379716 G-A Hetero INTERGENIC
SBS Chr4 19719566 A-G Homo INTERGENIC
SBS Chr4 24178243 C-T Hetero INTERGENIC
SBS Chr4 28872364 C-A Homo INTERGENIC
SBS Chr5 2611581 C-T Hetero INTERGENIC
SBS Chr5 4466511 G-A Hetero INTERGENIC
SBS Chr5 10240604 A-C Hetero INTERGENIC
SBS Chr5 11213836 C-A Hetero INTERGENIC
SBS Chr5 14249657 C-T Homo INTERGENIC
SBS Chr5 28358009 A-T Hetero INTERGENIC
SBS Chr6 19928894 A-C Homo INTERGENIC
SBS Chr7 13899892 G-A Homo INTERGENIC
SBS Chr9 14758538 G-A Hetero INTERGENIC
SBS Chr10 2110597 T-C Hetero INTERGENIC
SBS Chr10 4813947 C-T Hetero INTERGENIC
SBS Chr10 16281443 C-T Hetero INTERGENIC
SBS Chr10 20307401 G-A Hetero INTERGENIC
SBS Chr11 7207027 C-A Hetero INTERGENIC
SBS Chr11 11637054 T-G Hetero INTERGENIC
SBS Chr11 11637056 T-A Hetero INTERGENIC
SBS Chr11 28406486 G-T Hetero INTERGENIC
SBS Chr11 28406487 G-T Hetero INTERGENIC
SBS Chr12 11036566 T-C Homo INTERGENIC
SBS Chr12 21997818 A-G Hetero INTRON

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 596001 607000 10999
Deletion Chr9 1333206 1333219 13
Deletion Chr11 5374001 5398000 23999
Deletion Chr6 8460126 8460140 14
Deletion Chr11 10474670 10474673 3
Deletion Chr5 14431598 14431601 3
Deletion Chr7 14644161 14644163 2
Deletion Chr9 16011368 16011377 9
Deletion Chr11 16896002 16896004 2
Deletion Chr6 17903082 17903083 1
Deletion Chr11 18109037 18109040 3
Deletion Chr5 18507813 18507817 4
Deletion Chr4 20352627 20352634 7
Deletion Chr11 21029523 21029540 17 OsKitaake11g166400
Deletion Chr9 21659357 21659358 1
Deletion Chr8 25494086 25494093 7
Deletion Chr4 27569584 27569585 1
Deletion Chr8 27876501 27876506 5
Deletion Chr1 33520707 33520708 1 OsKitaake01g343100

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 15760771 15760774 2
Insertion Chr4 8092291 8092293 1
Insertion Chr8 6758453 6758458 4
Insertion Chr8 21756402 21756405 2
Insertion Chr8 26500108 26500111 2
Insertion Chr11 19653789 19653792 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 21656594 21664987 2
Inversion Chr5 21656599 21664995 2

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 5396246 Chr10 4506396
Translocation Chr4 20913484 Chr1 3650921 2
Translocation Chr4 20913543 Chr1 3649003 2
Translocation Chr12 22886546 Chr2 12619406 2
Translocation Chr12 22886549 Chr2 12615843 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9997217	C-T	Hetero	INTERGENIC
SBS	Chr1	13604175	G-A	Homo	INTERGENIC
SBS	Chr1	13604177	G-A	Homo	INTERGENIC
SBS	Chr1	23225585	T-A	Hetero	INTERGENIC
SBS	Chr1	23225586	A-C	Hetero	INTERGENIC
SBS	Chr1	26857192	G-A	Homo	INTERGENIC
SBS	Chr1	41334001	T-A	Hetero	INTERGENIC
SBS	Chr1	43142841	A-T	Hetero	INTERGENIC
SBS	Chr2	24238119	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g239500
SBS	Chr2	36324956	A-T	Hetero	INTERGENIC
SBS	Chr3	28689236	C-T	Hetero	INTERGENIC
SBS	Chr4	5379716	G-A	Hetero	INTERGENIC
SBS	Chr4	19719566	A-G	Homo	INTERGENIC
SBS	Chr4	24178243	C-T	Hetero	INTERGENIC
SBS	Chr4	28872364	C-A	Homo	INTERGENIC
SBS	Chr5	2611581	C-T	Hetero	INTERGENIC
SBS	Chr5	4466511	G-A	Hetero	INTERGENIC
SBS	Chr5	10240604	A-C	Hetero	INTERGENIC
SBS	Chr5	11213836	C-A	Hetero	INTERGENIC
SBS	Chr5	14249657	C-T	Homo	INTERGENIC
SBS	Chr5	28358009	A-T	Hetero	INTERGENIC
SBS	Chr6	19928894	A-C	Homo	INTERGENIC
SBS	Chr7	13899892	G-A	Homo	INTERGENIC
SBS	Chr9	14758538	G-A	Hetero	INTERGENIC
SBS	Chr10	2110597	T-C	Hetero	INTERGENIC
SBS	Chr10	4813947	C-T	Hetero	INTERGENIC
SBS	Chr10	16281443	C-T	Hetero	INTERGENIC
SBS	Chr10	20307401	G-A	Hetero	INTERGENIC
SBS	Chr11	7207027	C-A	Hetero	INTERGENIC
SBS	Chr11	11637054	T-G	Hetero	INTERGENIC
SBS	Chr11	11637056	T-A	Hetero	INTERGENIC
SBS	Chr11	28406486	G-T	Hetero	INTERGENIC
SBS	Chr11	28406487	G-T	Hetero	INTERGENIC
SBS	Chr12	11036566	T-C	Homo	INTERGENIC
SBS	Chr12	21997818	A-G	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	596001	607000	10999
Deletion	Chr9	1333206	1333219	13
Deletion	Chr11	5374001	5398000	23999
Deletion	Chr6	8460126	8460140	14
Deletion	Chr11	10474670	10474673	3
Deletion	Chr5	14431598	14431601	3
Deletion	Chr7	14644161	14644163	2
Deletion	Chr9	16011368	16011377	9
Deletion	Chr11	16896002	16896004	2
Deletion	Chr6	17903082	17903083	1
Deletion	Chr11	18109037	18109040	3
Deletion	Chr5	18507813	18507817	4
Deletion	Chr4	20352627	20352634	7
Deletion	Chr11	21029523	21029540	17	OsKitaake11g166400
Deletion	Chr9	21659357	21659358	1
Deletion	Chr8	25494086	25494093	7
Deletion	Chr4	27569584	27569585	1
Deletion	Chr8	27876501	27876506	5
Deletion	Chr1	33520707	33520708	1	OsKitaake01g343100

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	21656594	21664987	2
Inversion	Chr5	21656599	21664995	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes