Search Kitaake

Mutant Information

Mutant Name	FN1535-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1535-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Very Low (below 24% compare to WT) TO:0000207 (Plant height) = Short (Between 25% and 74%) TO:0000445 (Seed Number) = Low (Between 25% and 74%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6023833 A-T Hetero INTERGENIC
SBS Chr1 15591225 T-C Hetero INTERGENIC
SBS Chr2 2461000 A-G Hetero INTERGENIC
SBS Chr2 7123669 G-T Hetero UTR_5_PRIME
SBS Chr2 7123670 C-T Hetero UTR_5_PRIME
SBS Chr2 17905051 G-A Hetero INTERGENIC
SBS Chr3 8901866 G-A Hetero INTERGENIC
SBS Chr3 30036727 T-C Hetero INTERGENIC
SBS Chr4 5682056 A-G Hetero INTERGENIC
SBS Chr6 6243867 T-C Homo INTERGENIC
SBS Chr6 6463437 G-C Homo INTERGENIC
SBS Chr6 17778597 G-A Homo INTERGENIC
SBS Chr6 29102175 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g268500
SBS Chr7 14493643 C-T Homo INTERGENIC
SBS Chr7 23760735 C-G Hetero INTERGENIC
SBS Chr7 23833748 A-G Hetero INTERGENIC
SBS Chr7 25054350 A-G Hetero UTR_3_PRIME
SBS Chr7 27546943 C-A Hetero INTERGENIC
SBS Chr8 18953468 A-T Hetero INTRON
SBS Chr8 19240418 A-G Hetero INTERGENIC
SBS Chr10 14158031 G-T Hetero INTERGENIC
SBS Chr10 22525855 A-G Homo INTRON
SBS Chr11 16712452 C-T Homo INTERGENIC
SBS Chr12 4087971 A-G Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 1181384 1181385 1
Deletion Chr12 2715016 2715023 7
Deletion Chr11 3956308 3956314 6
Deletion Chr8 9122001 9144000 21999 2
Deletion Chr10 9514001 9527000 12999
Deletion Chr2 10216098 10216100 2
Deletion Chr2 10781367 10781369 2
Deletion Chr6 12379167 12379252 85
Deletion Chr10 23794238 23794243 5
Deletion Chr5 26836938 26836948 10
Deletion Chr7 26938001 26983000 44999 6
Deletion Chr2 30552637 30552708 71
Deletion Chr1 30944313 30944317 4
Deletion Chr2 34809988 34809989 1 OsKitaake02g362900

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 33166163 33166166 2
Insertion Chr3 10266529 10266534 4
Insertion Chr6 23922859 23922862 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6023833	A-T	Hetero	INTERGENIC
SBS	Chr1	15591225	T-C	Hetero	INTERGENIC
SBS	Chr2	2461000	A-G	Hetero	INTERGENIC
SBS	Chr2	7123669	G-T	Hetero	UTR_5_PRIME
SBS	Chr2	7123670	C-T	Hetero	UTR_5_PRIME
SBS	Chr2	17905051	G-A	Hetero	INTERGENIC
SBS	Chr3	8901866	G-A	Hetero	INTERGENIC
SBS	Chr3	30036727	T-C	Hetero	INTERGENIC
SBS	Chr4	5682056	A-G	Hetero	INTERGENIC
SBS	Chr6	6243867	T-C	Homo	INTERGENIC
SBS	Chr6	6463437	G-C	Homo	INTERGENIC
SBS	Chr6	17778597	G-A	Homo	INTERGENIC
SBS	Chr6	29102175	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g268500
SBS	Chr7	14493643	C-T	Homo	INTERGENIC
SBS	Chr7	23760735	C-G	Hetero	INTERGENIC
SBS	Chr7	23833748	A-G	Hetero	INTERGENIC
SBS	Chr7	25054350	A-G	Hetero	UTR_3_PRIME
SBS	Chr7	27546943	C-A	Hetero	INTERGENIC
SBS	Chr8	18953468	A-T	Hetero	INTRON
SBS	Chr8	19240418	A-G	Hetero	INTERGENIC
SBS	Chr10	14158031	G-T	Hetero	INTERGENIC
SBS	Chr10	22525855	A-G	Homo	INTRON
SBS	Chr11	16712452	C-T	Homo	INTERGENIC
SBS	Chr12	4087971	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1181384	1181385	1
Deletion	Chr12	2715016	2715023	7
Deletion	Chr11	3956308	3956314	6
Deletion	Chr8	9122001	9144000	21999	2
Deletion	Chr10	9514001	9527000	12999
Deletion	Chr2	10216098	10216100	2
Deletion	Chr2	10781367	10781369	2
Deletion	Chr6	12379167	12379252	85
Deletion	Chr10	23794238	23794243	5
Deletion	Chr5	26836938	26836948	10
Deletion	Chr7	26938001	26983000	44999	6
Deletion	Chr2	30552637	30552708	71
Deletion	Chr1	30944313	30944317	4
Deletion	Chr2	34809988	34809989	1	OsKitaake02g362900

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes