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Mutant Information

Mutant Name	FN1536-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1536-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 48

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 27094 T-A Hetero INTRON
SBS Chr1 3989125 G-A Homo UTR_5_PRIME
SBS Chr1 8776573 G-A Hetero INTERGENIC
SBS Chr1 10656967 G-A Homo INTERGENIC
SBS Chr1 13485326 G-C Hetero INTRON
SBS Chr1 13723794 C-T Hetero INTERGENIC
SBS Chr1 26413610 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g257100
SBS Chr1 30480652 C-T Hetero INTERGENIC
SBS Chr1 36970775 G-A Hetero UTR_3_PRIME
SBS Chr1 41018647 G-A Hetero INTERGENIC
SBS Chr2 34906 G-A Hetero INTERGENIC
SBS Chr2 531651 G-A Hetero INTERGENIC
SBS Chr2 9573704 C-T Homo INTERGENIC
SBS Chr2 31824256 G-A Hetero INTERGENIC
SBS Chr3 11547272 A-C Hetero INTERGENIC
SBS Chr3 21509555 C-T Homo INTERGENIC
SBS Chr3 28394723 C-T Hetero UTR_3_PRIME
SBS Chr3 30910575 T-A Homo INTERGENIC
SBS Chr4 10245968 G-A Hetero INTERGENIC
SBS Chr4 12532969 G-T Hetero INTERGENIC
SBS Chr4 28070230 G-A Hetero INTERGENIC
SBS Chr4 29384725 T-C Hetero INTERGENIC
SBS Chr5 1173338 G-A Hetero INTERGENIC
SBS Chr5 1904629 T-C Hetero INTERGENIC
SBS Chr5 17641710 G-A Hetero INTRON
SBS Chr5 25299717 C-G Hetero INTERGENIC
SBS Chr6 5585966 T-C Hetero INTERGENIC
SBS Chr6 7688873 G-C Hetero INTERGENIC
SBS Chr6 9169912 T-C Hetero INTERGENIC
SBS Chr6 12531608 A-G Hetero INTERGENIC
SBS Chr6 15039631 T-A Hetero INTERGENIC
SBS Chr6 18736260 C-T Hetero INTERGENIC
SBS Chr7 4278421 A-T Hetero INTERGENIC
SBS Chr7 5877715 G-T Hetero INTERGENIC
SBS Chr7 17354383 C-A Homo NON_SYNONYMOUS_CODING OsKitaake07g141300
SBS Chr8 12861475 G-A Hetero INTERGENIC
SBS Chr8 17927200 C-T Hetero INTERGENIC
SBS Chr9 6132646 C-A Hetero INTERGENIC
SBS Chr9 11607386 A-T Homo INTERGENIC
SBS Chr10 5576780 A-G Homo INTERGENIC
SBS Chr10 8792769 A-C Hetero INTRON
SBS Chr10 19386785 T-C Hetero INTERGENIC
SBS Chr10 19728605 C-T Hetero INTERGENIC
SBS Chr11 4953849 T-A Hetero UTR_3_PRIME
SBS Chr11 6872997 G-A Homo INTERGENIC
SBS Chr11 15007742 A-T Homo INTERGENIC
SBS Chr11 19782951 A-T Hetero INTRON
SBS Chr12 15959995 T-C Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 4124845 4124846 1
Deletion Chr12 4771358 4771362 4
Deletion Chr3 7496426 7496428 2
Deletion Chr7 14030617 14030818 201 OsKitaake07g121100
Deletion Chr1 19217051 19217058 7
Deletion Chr5 27717140 27717146 6
Deletion Chr6 28867842 28867843 1
Deletion Chr6 29211509 29211510 1
Deletion Chr5 29401543 29401545 2
Deletion Chr5 30069445 30069448 3 OsKitaake05g288800
Deletion Chr3 30499012 30499020 8

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 18354747 18354750 2
Insertion Chr1 31371061 31371064 2
Insertion Chr7 24524126 24524129 2
Insertion Chr12 20108868 20108871 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 9883245 9888422 OsKitaake10g057700
Inversion Chr10 9883249 9888420 OsKitaake10g057700
Inversion Chr11 14309230 14701294 OsKitaake11g119700
Inversion Chr11 14309248 14701299 OsKitaake11g119700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27094	T-A	Hetero	INTRON
SBS	Chr1	3989125	G-A	Homo	UTR_5_PRIME
SBS	Chr1	8776573	G-A	Hetero	INTERGENIC
SBS	Chr1	10656967	G-A	Homo	INTERGENIC
SBS	Chr1	13485326	G-C	Hetero	INTRON
SBS	Chr1	13723794	C-T	Hetero	INTERGENIC
SBS	Chr1	26413610	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g257100
SBS	Chr1	30480652	C-T	Hetero	INTERGENIC
SBS	Chr1	36970775	G-A	Hetero	UTR_3_PRIME
SBS	Chr1	41018647	G-A	Hetero	INTERGENIC
SBS	Chr2	34906	G-A	Hetero	INTERGENIC
SBS	Chr2	531651	G-A	Hetero	INTERGENIC
SBS	Chr2	9573704	C-T	Homo	INTERGENIC
SBS	Chr2	31824256	G-A	Hetero	INTERGENIC
SBS	Chr3	11547272	A-C	Hetero	INTERGENIC
SBS	Chr3	21509555	C-T	Homo	INTERGENIC
SBS	Chr3	28394723	C-T	Hetero	UTR_3_PRIME
SBS	Chr3	30910575	T-A	Homo	INTERGENIC
SBS	Chr4	10245968	G-A	Hetero	INTERGENIC
SBS	Chr4	12532969	G-T	Hetero	INTERGENIC
SBS	Chr4	28070230	G-A	Hetero	INTERGENIC
SBS	Chr4	29384725	T-C	Hetero	INTERGENIC
SBS	Chr5	1173338	G-A	Hetero	INTERGENIC
SBS	Chr5	1904629	T-C	Hetero	INTERGENIC
SBS	Chr5	17641710	G-A	Hetero	INTRON
SBS	Chr5	25299717	C-G	Hetero	INTERGENIC
SBS	Chr6	5585966	T-C	Hetero	INTERGENIC
SBS	Chr6	7688873	G-C	Hetero	INTERGENIC
SBS	Chr6	9169912	T-C	Hetero	INTERGENIC
SBS	Chr6	12531608	A-G	Hetero	INTERGENIC
SBS	Chr6	15039631	T-A	Hetero	INTERGENIC
SBS	Chr6	18736260	C-T	Hetero	INTERGENIC
SBS	Chr7	4278421	A-T	Hetero	INTERGENIC
SBS	Chr7	5877715	G-T	Hetero	INTERGENIC
SBS	Chr7	17354383	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g141300
SBS	Chr8	12861475	G-A	Hetero	INTERGENIC
SBS	Chr8	17927200	C-T	Hetero	INTERGENIC
SBS	Chr9	6132646	C-A	Hetero	INTERGENIC
SBS	Chr9	11607386	A-T	Homo	INTERGENIC
SBS	Chr10	5576780	A-G	Homo	INTERGENIC
SBS	Chr10	8792769	A-C	Hetero	INTRON
SBS	Chr10	19386785	T-C	Hetero	INTERGENIC
SBS	Chr10	19728605	C-T	Hetero	INTERGENIC
SBS	Chr11	4953849	T-A	Hetero	UTR_3_PRIME
SBS	Chr11	6872997	G-A	Homo	INTERGENIC
SBS	Chr11	15007742	A-T	Homo	INTERGENIC
SBS	Chr11	19782951	A-T	Hetero	INTRON
SBS	Chr12	15959995	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	4124845	4124846	1
Deletion	Chr12	4771358	4771362	4
Deletion	Chr3	7496426	7496428	2
Deletion	Chr7	14030617	14030818	201	OsKitaake07g121100
Deletion	Chr1	19217051	19217058	7
Deletion	Chr5	27717140	27717146	6
Deletion	Chr6	28867842	28867843	1
Deletion	Chr6	29211509	29211510	1
Deletion	Chr5	29401543	29401545	2
Deletion	Chr5	30069445	30069448	3	OsKitaake05g288800
Deletion	Chr3	30499012	30499020	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	9883245	9888422	OsKitaake10g057700
Inversion	Chr10	9883249	9888420	OsKitaake10g057700
Inversion	Chr11	14309230	14701294	OsKitaake11g119700
Inversion	Chr11	14309248	14701299	OsKitaake11g119700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes