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Mutant Information

Mutant Name	FN1537-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1537-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1982208 C-A Hetero INTRON
SBS Chr1 2665642 T-C Hetero INTERGENIC
SBS Chr1 5077136 A-G Hetero INTERGENIC
SBS Chr1 9683940 C-T Hetero INTERGENIC
SBS Chr1 22699145 T-A Hetero INTERGENIC
SBS Chr1 39694025 C-T Hetero INTERGENIC
SBS Chr2 1215283 G-C Homo UTR_3_PRIME
SBS Chr2 13676307 T-C Hetero INTERGENIC
SBS Chr2 23111003 C-T Hetero INTERGENIC
SBS Chr2 24881801 G-A Homo INTERGENIC
SBS Chr2 29700266 G-A Homo INTERGENIC
SBS Chr3 129835 C-T Hetero UTR_5_PRIME
SBS Chr3 9941567 C-T Hetero INTRON
SBS Chr3 15471659 C-T Hetero INTERGENIC
SBS Chr3 24307784 A-T Hetero UTR_3_PRIME
SBS Chr3 30670276 C-T Hetero INTERGENIC
SBS Chr3 36592852 G-A Hetero SYNONYMOUS_CODING
SBS Chr4 21130379 G-A Homo INTERGENIC
SBS Chr5 7296648 G-A Hetero INTERGENIC
SBS Chr6 25603959 A-G Hetero INTERGENIC
SBS Chr6 27641986 C-T Homo INTERGENIC
SBS Chr7 3353447 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g042300
SBS Chr7 5195887 T-C Hetero INTERGENIC
SBS Chr7 11979765 T-C Hetero INTERGENIC
SBS Chr7 21794244 C-T Homo INTERGENIC
SBS Chr8 6982330 C-A Hetero INTERGENIC
SBS Chr8 7078934 G-A Hetero INTERGENIC
SBS Chr8 18531942 G-A Homo INTERGENIC
SBS Chr9 3007950 C-G Hetero INTERGENIC
SBS Chr9 7356629 C-T Homo INTERGENIC
SBS Chr9 7899071 T-C Homo INTERGENIC
SBS Chr9 13898181 C-T Hetero INTERGENIC
SBS Chr10 802847 G-A Hetero INTRON
SBS Chr10 21318059 C-G Hetero INTERGENIC
SBS Chr11 261082 T-A Homo UTR_5_PRIME
SBS Chr11 11616124 C-T Homo INTERGENIC
SBS Chr11 12290773 C-A Homo INTERGENIC
SBS Chr11 16868991 A-T Hetero INTERGENIC
SBS Chr11 16868992 C-A Hetero INTERGENIC
SBS Chr11 18822725 C-A Homo INTERGENIC
SBS Chr11 27011153 G-A Homo INTERGENIC
SBS Chr12 2922274 A-T Homo INTRON
SBS Chr12 4957325 G-T Hetero INTRON
SBS Chr12 11215010 A-G Hetero INTERGENIC
SBS Chr12 15047592 G-T Hetero INTERGENIC
SBS Chr12 21734778 G-A Homo INTRON

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 6340118 6340125 7
Deletion Chr8 6655627 6655644 17
Deletion Chr1 11307167 11307168 1
Deletion Chr8 12042473 12042477 4
Deletion Chr5 12783627 12783638 11
Deletion Chr7 13860192 13860193 1
Deletion Chr3 25033035 25033047 12
Deletion Chr12 26982598 26982603 5
Deletion Chr4 30076396 30076401 5
Deletion Chr4 30699543 30699544 1
Deletion Chr3 35551068 35551069 1
Deletion Chr2 36458014 36458018 4 OsKitaake02g386700
Deletion Chr2 36501131 36501138 7 OsKitaake02g387800
Deletion Chr1 39575001 39667000 91999 12

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 12044418 12044424 5
Insertion Chr4 20339276 20339279 2
Insertion Chr7 20549881 20549884 2
Insertion Chr8 8874162 8874165 2
Insertion Chr9 21876720 21876722 1
Insertion Chr11 22992309 22992312 2
Insertion Chr1 30253324 30253326 1 OsKitaake01g298000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1982208	C-A	Hetero	INTRON
SBS	Chr1	2665642	T-C	Hetero	INTERGENIC
SBS	Chr1	5077136	A-G	Hetero	INTERGENIC
SBS	Chr1	9683940	C-T	Hetero	INTERGENIC
SBS	Chr1	22699145	T-A	Hetero	INTERGENIC
SBS	Chr1	39694025	C-T	Hetero	INTERGENIC
SBS	Chr2	1215283	G-C	Homo	UTR_3_PRIME
SBS	Chr2	13676307	T-C	Hetero	INTERGENIC
SBS	Chr2	23111003	C-T	Hetero	INTERGENIC
SBS	Chr2	24881801	G-A	Homo	INTERGENIC
SBS	Chr2	29700266	G-A	Homo	INTERGENIC
SBS	Chr3	129835	C-T	Hetero	UTR_5_PRIME
SBS	Chr3	9941567	C-T	Hetero	INTRON
SBS	Chr3	15471659	C-T	Hetero	INTERGENIC
SBS	Chr3	24307784	A-T	Hetero	UTR_3_PRIME
SBS	Chr3	30670276	C-T	Hetero	INTERGENIC
SBS	Chr3	36592852	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	21130379	G-A	Homo	INTERGENIC
SBS	Chr5	7296648	G-A	Hetero	INTERGENIC
SBS	Chr6	25603959	A-G	Hetero	INTERGENIC
SBS	Chr6	27641986	C-T	Homo	INTERGENIC
SBS	Chr7	3353447	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g042300
SBS	Chr7	5195887	T-C	Hetero	INTERGENIC
SBS	Chr7	11979765	T-C	Hetero	INTERGENIC
SBS	Chr7	21794244	C-T	Homo	INTERGENIC
SBS	Chr8	6982330	C-A	Hetero	INTERGENIC
SBS	Chr8	7078934	G-A	Hetero	INTERGENIC
SBS	Chr8	18531942	G-A	Homo	INTERGENIC
SBS	Chr9	3007950	C-G	Hetero	INTERGENIC
SBS	Chr9	7356629	C-T	Homo	INTERGENIC
SBS	Chr9	7899071	T-C	Homo	INTERGENIC
SBS	Chr9	13898181	C-T	Hetero	INTERGENIC
SBS	Chr10	802847	G-A	Hetero	INTRON
SBS	Chr10	21318059	C-G	Hetero	INTERGENIC
SBS	Chr11	261082	T-A	Homo	UTR_5_PRIME
SBS	Chr11	11616124	C-T	Homo	INTERGENIC
SBS	Chr11	12290773	C-A	Homo	INTERGENIC
SBS	Chr11	16868991	A-T	Hetero	INTERGENIC
SBS	Chr11	16868992	C-A	Hetero	INTERGENIC
SBS	Chr11	18822725	C-A	Homo	INTERGENIC
SBS	Chr11	27011153	G-A	Homo	INTERGENIC
SBS	Chr12	2922274	A-T	Homo	INTRON
SBS	Chr12	4957325	G-T	Hetero	INTRON
SBS	Chr12	11215010	A-G	Hetero	INTERGENIC
SBS	Chr12	15047592	G-T	Hetero	INTERGENIC
SBS	Chr12	21734778	G-A	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	6340118	6340125	7
Deletion	Chr8	6655627	6655644	17
Deletion	Chr1	11307167	11307168	1
Deletion	Chr8	12042473	12042477	4
Deletion	Chr5	12783627	12783638	11
Deletion	Chr7	13860192	13860193	1
Deletion	Chr3	25033035	25033047	12
Deletion	Chr12	26982598	26982603	5
Deletion	Chr4	30076396	30076401	5
Deletion	Chr4	30699543	30699544	1
Deletion	Chr3	35551068	35551069	1
Deletion	Chr2	36458014	36458018	4	OsKitaake02g386700
Deletion	Chr2	36501131	36501138	7	OsKitaake02g387800
Deletion	Chr1	39575001	39667000	91999	12

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes