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Mutant Information

Mutant Name	FN1538-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1538-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10809265 C-A Homo INTERGENIC
SBS Chr1 24620748 T-C Hetero INTRON
SBS Chr1 27201580 A-T Hetero INTERGENIC
SBS Chr2 8233956 C-T Hetero INTERGENIC
SBS Chr2 23954202 G-A Homo INTERGENIC
SBS Chr2 29919376 A-G Homo INTRON
SBS Chr2 31490744 T-C Hetero INTERGENIC
SBS Chr3 5053501 C-T Hetero INTERGENIC
SBS Chr3 19498540 T-C Hetero INTERGENIC
SBS Chr3 25951410 G-T Hetero INTERGENIC
SBS Chr3 26484847 C-T Homo SYNONYMOUS_CODING
SBS Chr3 35711214 G-A Hetero INTERGENIC
SBS Chr3 36352801 A-G Hetero INTRON
SBS Chr5 6206109 C-A Homo INTERGENIC
SBS Chr6 5544546 T-C Homo INTRON
SBS Chr6 5546616 T-C Homo INTERGENIC
SBS Chr6 20097423 T-C Hetero INTERGENIC
SBS Chr6 22284224 G-A Hetero INTERGENIC
SBS Chr7 3326517 T-G Homo NON_SYNONYMOUS_CODING OsKitaake07g042100
SBS Chr8 7603490 G-A Hetero INTERGENIC
SBS Chr8 17195283 T-A Homo INTERGENIC
SBS Chr8 20476519 G-A Homo INTERGENIC
SBS Chr9 1645519 A-T Homo INTERGENIC
SBS Chr9 1645520 C-T Homo INTERGENIC
SBS Chr10 4250992 C-T Hetero INTERGENIC
SBS Chr10 5205654 G-A Hetero INTERGENIC
SBS Chr10 6314720 C-A Homo INTERGENIC
SBS Chr11 9768885 A-G Hetero INTERGENIC
SBS Chr11 16019030 G-A Homo INTERGENIC
SBS Chr11 25568059 G-A Homo INTERGENIC
SBS Chr11 25982042 T-A Homo INTERGENIC
SBS Chr12 9440686 C-A Homo INTERGENIC
SBS Chr12 13547376 C-T Homo INTERGENIC
SBS Chr12 23800581 G-C Homo INTRON

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 801477 801485 8
Deletion Chr10 2266292 2266300 8
Deletion Chr10 3986987 3986989 2
Deletion Chr2 4346659 4346660 1
Deletion Chr5 5731615 5731616 1
Deletion Chr5 5844001 6070000 225999 10
Deletion Chr2 10266413 10266415 2
Deletion Chr9 12230679 12230692 13
Deletion Chr1 12278152 12278158 6
Deletion Chr5 17331984 17331986 2
Deletion Chr4 19349989 19349991 2
Deletion Chr9 20415735 20415744 9
Deletion Chr4 22730282 22730293 11
Deletion Chr1 24576001 24585000 8999 3
Deletion Chr8 28139557 28139558 1
Deletion Chr5 28535763 28535766 3
Deletion Chr2 33517732 33517736 4

Insertions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 29830062 29830065 2
Insertion Chr2 34236393 34236396 2
Insertion Chr2 36399854 36399857 2
Insertion Chr5 20976434 20976437 2
Insertion Chr7 4036415 4036418 2
Insertion Chr9 1454778 1454781 2
Insertion Chr11 27540385 27540388 2
Insertion Chr4 13238148 13238150 1
Insertion Chr5 11224004 11224006 1
Insertion Chr10 8274727 8274729 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 7032095 7414561 2
Inversion Chr5 7032108 7414583 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr2 1702917 Chr1 26984312 OsKitaake01g262001

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10809265	C-A	Homo	INTERGENIC
SBS	Chr1	24620748	T-C	Hetero	INTRON
SBS	Chr1	27201580	A-T	Hetero	INTERGENIC
SBS	Chr2	8233956	C-T	Hetero	INTERGENIC
SBS	Chr2	23954202	G-A	Homo	INTERGENIC
SBS	Chr2	29919376	A-G	Homo	INTRON
SBS	Chr2	31490744	T-C	Hetero	INTERGENIC
SBS	Chr3	5053501	C-T	Hetero	INTERGENIC
SBS	Chr3	19498540	T-C	Hetero	INTERGENIC
SBS	Chr3	25951410	G-T	Hetero	INTERGENIC
SBS	Chr3	26484847	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr3	35711214	G-A	Hetero	INTERGENIC
SBS	Chr3	36352801	A-G	Hetero	INTRON
SBS	Chr5	6206109	C-A	Homo	INTERGENIC
SBS	Chr6	5544546	T-C	Homo	INTRON
SBS	Chr6	5546616	T-C	Homo	INTERGENIC
SBS	Chr6	20097423	T-C	Hetero	INTERGENIC
SBS	Chr6	22284224	G-A	Hetero	INTERGENIC
SBS	Chr7	3326517	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g042100
SBS	Chr8	7603490	G-A	Hetero	INTERGENIC
SBS	Chr8	17195283	T-A	Homo	INTERGENIC
SBS	Chr8	20476519	G-A	Homo	INTERGENIC
SBS	Chr9	1645519	A-T	Homo	INTERGENIC
SBS	Chr9	1645520	C-T	Homo	INTERGENIC
SBS	Chr10	4250992	C-T	Hetero	INTERGENIC
SBS	Chr10	5205654	G-A	Hetero	INTERGENIC
SBS	Chr10	6314720	C-A	Homo	INTERGENIC
SBS	Chr11	9768885	A-G	Hetero	INTERGENIC
SBS	Chr11	16019030	G-A	Homo	INTERGENIC
SBS	Chr11	25568059	G-A	Homo	INTERGENIC
SBS	Chr11	25982042	T-A	Homo	INTERGENIC
SBS	Chr12	9440686	C-A	Homo	INTERGENIC
SBS	Chr12	13547376	C-T	Homo	INTERGENIC
SBS	Chr12	23800581	G-C	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	801477	801485	8
Deletion	Chr10	2266292	2266300	8
Deletion	Chr10	3986987	3986989	2
Deletion	Chr2	4346659	4346660	1
Deletion	Chr5	5731615	5731616	1
Deletion	Chr5	5844001	6070000	225999	10
Deletion	Chr2	10266413	10266415	2
Deletion	Chr9	12230679	12230692	13
Deletion	Chr1	12278152	12278158	6
Deletion	Chr5	17331984	17331986	2
Deletion	Chr4	19349989	19349991	2
Deletion	Chr9	20415735	20415744	9
Deletion	Chr4	22730282	22730293	11
Deletion	Chr1	24576001	24585000	8999	3
Deletion	Chr8	28139557	28139558	1
Deletion	Chr5	28535763	28535766	3
Deletion	Chr2	33517732	33517736	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	7032095	7414561	2
Inversion	Chr5	7032108	7414583	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes