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Mutant Information

Mutant Name	FN1543-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1543-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15984495 G-A Hetero INTERGENIC
SBS Chr2 18782481 C-G Homo INTERGENIC
SBS Chr2 21614267 G-A Homo INTERGENIC
SBS Chr2 27047036 C-T Homo INTERGENIC
SBS Chr3 1099616 T-A Hetero INTRON
SBS Chr3 5401130 A-T Hetero INTERGENIC
SBS Chr3 6889081 G-A Hetero INTERGENIC
SBS Chr3 10019974 T-C Homo INTERGENIC
SBS Chr3 16752567 C-T Homo INTERGENIC
SBS Chr4 23387401 A-G Homo INTERGENIC
SBS Chr5 28542197 C-A Hetero INTRON
SBS Chr6 11853893 C-A Homo INTERGENIC
SBS Chr6 23173424 C-T Hetero INTERGENIC
SBS Chr7 24190919 A-T Homo INTERGENIC
SBS Chr8 3075023 A-G Hetero INTERGENIC
SBS Chr8 16764348 G-A Hetero INTERGENIC
SBS Chr8 22231870 T-C Hetero INTERGENIC
SBS Chr8 25096993 G-T Homo NON_SYNONYMOUS_CODING OsKitaake08g195000
SBS Chr8 25096996 G-T Homo SYNONYMOUS_CODING
SBS Chr8 27002230 C-G Homo NON_SYNONYMOUS_CODING OsKitaake08g219400
SBS Chr9 18740804 C-A Homo INTERGENIC
SBS Chr10 2958666 G-A Homo INTERGENIC
SBS Chr10 3918587 A-T Homo INTERGENIC
SBS Chr10 18870699 C-T Hetero INTERGENIC
SBS Chr12 23247450 C-T Hetero UTR_3_PRIME

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 88990 88991 1
Deletion Chr5 1386001 1441000 54999 8
Deletion Chr2 3924586 3924588 2
Deletion Chr10 5714744 5714748 4
Deletion Chr4 6391446 6391452 6
Deletion Chr11 12482728 12482737 9
Deletion Chr4 16132715 16132726 11
Deletion Chr2 16585314 16585328 14
Deletion Chr12 17376502 17376503 1
Deletion Chr4 20651275 20651277 2
Deletion Chr2 23166001 23206000 39999 4
Deletion Chr8 26206640 26206641 1 OsKitaake08g209000
Deletion Chr1 35874103 35874113 10

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 38844044 38844047 2
Insertion Chr9 22247724 22247727 2
Insertion Chr11 24769842 24769845 2
Insertion Chr2 35328984 35328987 2
Insertion Chr3 16743903 16743905 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 8783957 9635428
Inversion Chr11 8785104 9635432
Inversion Chr1 35543562 35544875
Inversion Chr1 35543864 35544841

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 373035 Chr11 214194
Translocation Chr9 8427439 Chr4 18859248
Translocation Chr11 8783974 Chr9 22338615 OsKitaake09g202500
Translocation Chr11 8785077 Chr9 22338616 OsKitaake09g202500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15984495	G-A	Hetero	INTERGENIC
SBS	Chr2	18782481	C-G	Homo	INTERGENIC
SBS	Chr2	21614267	G-A	Homo	INTERGENIC
SBS	Chr2	27047036	C-T	Homo	INTERGENIC
SBS	Chr3	1099616	T-A	Hetero	INTRON
SBS	Chr3	5401130	A-T	Hetero	INTERGENIC
SBS	Chr3	6889081	G-A	Hetero	INTERGENIC
SBS	Chr3	10019974	T-C	Homo	INTERGENIC
SBS	Chr3	16752567	C-T	Homo	INTERGENIC
SBS	Chr4	23387401	A-G	Homo	INTERGENIC
SBS	Chr5	28542197	C-A	Hetero	INTRON
SBS	Chr6	11853893	C-A	Homo	INTERGENIC
SBS	Chr6	23173424	C-T	Hetero	INTERGENIC
SBS	Chr7	24190919	A-T	Homo	INTERGENIC
SBS	Chr8	3075023	A-G	Hetero	INTERGENIC
SBS	Chr8	16764348	G-A	Hetero	INTERGENIC
SBS	Chr8	22231870	T-C	Hetero	INTERGENIC
SBS	Chr8	25096993	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g195000
SBS	Chr8	25096996	G-T	Homo	SYNONYMOUS_CODING
SBS	Chr8	27002230	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g219400
SBS	Chr9	18740804	C-A	Homo	INTERGENIC
SBS	Chr10	2958666	G-A	Homo	INTERGENIC
SBS	Chr10	3918587	A-T	Homo	INTERGENIC
SBS	Chr10	18870699	C-T	Hetero	INTERGENIC
SBS	Chr12	23247450	C-T	Hetero	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	88990	88991	1
Deletion	Chr5	1386001	1441000	54999	8
Deletion	Chr2	3924586	3924588	2
Deletion	Chr10	5714744	5714748	4
Deletion	Chr4	6391446	6391452	6
Deletion	Chr11	12482728	12482737	9
Deletion	Chr4	16132715	16132726	11
Deletion	Chr2	16585314	16585328	14
Deletion	Chr12	17376502	17376503	1
Deletion	Chr4	20651275	20651277	2
Deletion	Chr2	23166001	23206000	39999	4
Deletion	Chr8	26206640	26206641	1	OsKitaake08g209000
Deletion	Chr1	35874103	35874113	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	8783957	9635428
Inversion	Chr11	8785104	9635432
Inversion	Chr1	35543562	35544875
Inversion	Chr1	35543864	35544841

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes