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Mutant Information

Mutant Name	FN1545-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1545-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7964467 G-A Hetero INTERGENIC
SBS Chr1 10441130 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 10441133 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g130600
SBS Chr1 19254617 G-A Homo INTERGENIC
SBS Chr2 31126006 G-T Hetero INTRON
SBS Chr3 33856974 T-G Homo INTERGENIC
SBS Chr4 13281750 C-T Hetero INTERGENIC
SBS Chr4 31270726 G-T Homo UTR_3_PRIME
SBS Chr4 35951786 T-A Homo INTERGENIC
SBS Chr5 1488899 A-G Homo INTERGENIC
SBS Chr5 25254169 T-A Hetero INTERGENIC
SBS Chr6 24385373 T-A Hetero INTERGENIC
SBS Chr6 25859259 T-A Hetero INTERGENIC
SBS Chr7 6772903 C-T Hetero INTERGENIC
SBS Chr7 7149157 G-A Hetero INTERGENIC
SBS Chr7 7149158 G-C Hetero INTERGENIC
SBS Chr7 9304272 G-A Hetero INTERGENIC
SBS Chr7 9304892 G-A Hetero INTERGENIC
SBS Chr7 11859659 C-A Homo INTERGENIC
SBS Chr8 5679599 C-T Hetero INTERGENIC
SBS Chr8 5679613 A-G Hetero INTERGENIC
SBS Chr8 12342457 G-A Homo INTERGENIC
SBS Chr9 1667424 C-T Hetero INTERGENIC
SBS Chr9 20700155 A-G Homo SYNONYMOUS_CODING
SBS Chr10 1855850 G-T Hetero INTRON
SBS Chr10 5834433 T-C Hetero INTERGENIC
SBS Chr10 10589691 G-A Hetero INTERGENIC
SBS Chr10 12934959 T-C Hetero INTERGENIC
SBS Chr10 14101406 A-T Hetero INTERGENIC
SBS Chr10 14784783 G-A Hetero INTERGENIC
SBS Chr10 17075006 G-T Hetero INTRON
SBS Chr10 17343340 G-A Hetero INTERGENIC
SBS Chr11 11747722 T-C Hetero INTERGENIC
SBS Chr11 12530632 A-C Hetero INTERGENIC
SBS Chr11 19362953 T-C Hetero UTR_3_PRIME
SBS Chr12 9097437 A-T Homo INTERGENIC
SBS Chr12 10810084 G-C Homo INTRON
SBS Chr12 26379811 G-T Hetero INTERGENIC
SBS Chr12 26826734 C-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 6637572 6637574 2
Deletion Chr12 6690001 6697000 6999 2
Deletion Chr7 12991964 12992031 67
Deletion Chr12 13116519 13116525 6
Deletion Chr10 16025001 16083000 57999 6
Deletion Chr12 16613797 16613804 7
Deletion Chr10 17219821 17219835 14
Deletion Chr2 18609163 18609166 3
Deletion Chr10 19027247 19027263 16
Deletion Chr5 21149840 21149844 4
Deletion Chr3 22099306 22099307 1
Deletion Chr5 30258420 30258421 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 7356859 7356863 3
Insertion Chr5 15001257 15001260 2
Insertion Chr7 5277196 5277199 2
Insertion Chr7 28346703 28346706 2
Insertion Chr8 3660479 3660481 1
Insertion Chr11 24853022 24853025 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 24702504 25397489 OsKitaake12g208200

Translocations: 9

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 2573450 Chr3 16383346
Translocation Chr10 2573458 Chr3 16690228
Translocation Chr4 2795887 Chr3 26886301
Translocation Chr12 6697546 Chr1 6739834
Translocation Chr12 6701172 Chr1 6739916
Translocation Chr10 16024188 Chr3 28177425
Translocation Chr10 18256705 Chr2 25680572 OsKitaake02g253900
Translocation Chr10 18256715 Chr2 25680402 OsKitaake02g253900
Translocation Chr10 19590683 Chr3 28178247

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7964467	G-A	Hetero	INTERGENIC
SBS	Chr1	10441130	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	10441133	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g130600
SBS	Chr1	19254617	G-A	Homo	INTERGENIC
SBS	Chr2	31126006	G-T	Hetero	INTRON
SBS	Chr3	33856974	T-G	Homo	INTERGENIC
SBS	Chr4	13281750	C-T	Hetero	INTERGENIC
SBS	Chr4	31270726	G-T	Homo	UTR_3_PRIME
SBS	Chr4	35951786	T-A	Homo	INTERGENIC
SBS	Chr5	1488899	A-G	Homo	INTERGENIC
SBS	Chr5	25254169	T-A	Hetero	INTERGENIC
SBS	Chr6	24385373	T-A	Hetero	INTERGENIC
SBS	Chr6	25859259	T-A	Hetero	INTERGENIC
SBS	Chr7	6772903	C-T	Hetero	INTERGENIC
SBS	Chr7	7149157	G-A	Hetero	INTERGENIC
SBS	Chr7	7149158	G-C	Hetero	INTERGENIC
SBS	Chr7	9304272	G-A	Hetero	INTERGENIC
SBS	Chr7	9304892	G-A	Hetero	INTERGENIC
SBS	Chr7	11859659	C-A	Homo	INTERGENIC
SBS	Chr8	5679599	C-T	Hetero	INTERGENIC
SBS	Chr8	5679613	A-G	Hetero	INTERGENIC
SBS	Chr8	12342457	G-A	Homo	INTERGENIC
SBS	Chr9	1667424	C-T	Hetero	INTERGENIC
SBS	Chr9	20700155	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr10	1855850	G-T	Hetero	INTRON
SBS	Chr10	5834433	T-C	Hetero	INTERGENIC
SBS	Chr10	10589691	G-A	Hetero	INTERGENIC
SBS	Chr10	12934959	T-C	Hetero	INTERGENIC
SBS	Chr10	14101406	A-T	Hetero	INTERGENIC
SBS	Chr10	14784783	G-A	Hetero	INTERGENIC
SBS	Chr10	17075006	G-T	Hetero	INTRON
SBS	Chr10	17343340	G-A	Hetero	INTERGENIC
SBS	Chr11	11747722	T-C	Hetero	INTERGENIC
SBS	Chr11	12530632	A-C	Hetero	INTERGENIC
SBS	Chr11	19362953	T-C	Hetero	UTR_3_PRIME
SBS	Chr12	9097437	A-T	Homo	INTERGENIC
SBS	Chr12	10810084	G-C	Homo	INTRON
SBS	Chr12	26379811	G-T	Hetero	INTERGENIC
SBS	Chr12	26826734	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	6637572	6637574	2
Deletion	Chr12	6690001	6697000	6999	2
Deletion	Chr7	12991964	12992031	67
Deletion	Chr12	13116519	13116525	6
Deletion	Chr10	16025001	16083000	57999	6
Deletion	Chr12	16613797	16613804	7
Deletion	Chr10	17219821	17219835	14
Deletion	Chr2	18609163	18609166	3
Deletion	Chr10	19027247	19027263	16
Deletion	Chr5	21149840	21149844	4
Deletion	Chr3	22099306	22099307	1
Deletion	Chr5	30258420	30258421	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	24702504	25397489	OsKitaake12g208200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes