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| Mutant Information |
|---|
| Mutant Name | FN1547-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1547-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 19337219 | G-A | Homo | INTRON | |
| SBS | Chr1 | 23291023 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 34498242 | C-T | Hetero | INTRON | |
| SBS | Chr3 | 5197390 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 13918961 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g183400 |
| SBS | Chr3 | 16765105 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 19440108 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 135507 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 10735656 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 10735657 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 27980258 | A-T | Hetero | INTRON | |
| SBS | Chr4 | 30420084 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr4 | 36582787 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 6730014 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 13852633 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 16123707 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 22358989 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 9055571 | A-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 25669419 | A-C | Homo | INTERGENIC | |
| SBS | Chr9 | 5393386 | G-T | Homo | INTRON | |
| SBS | Chr9 | 12075758 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 13019794 | G-C | Homo | INTERGENIC | |
| SBS | Chr11 | 12275032 | T-G | Homo | INTRON | |
| SBS | Chr12 | 13138053 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 22409498 | C-T | Hetero | INTERGENIC |
Deletions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 168281 | 168283 | 2 | |
| Deletion | Chr2 | 4427419 | 4427421 | 2 | |
| Deletion | Chr4 | 6242402 | 6242406 | 4 | |
| Deletion | Chr10 | 7388172 | 7388180 | 8 | |
| Deletion | Chr12 | 8427789 | 8427800 | 11 | |
| Deletion | Chr3 | 12662448 | 12662451 | 3 | OsKitaake03g170800 |
| Deletion | Chr9 | 13257001 | 13264000 | 6999 | 4 |
| Deletion | Chr3 | 27245076 | 27245081 | 5 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr12 | 1740173 | 1740175 | 1 | OsKitaake12g026400  |
| Insertion | Chr6 | 7838 | 7840 | 1 |
Inversions: 8
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 3626847 | 3941212 | OsKitaake11g050200 |
| Inversion | Chr11 | 3626858 | 4279754 | OsKitaake11g050200 |
| Inversion | Chr2 | 8044502 | 8366570 | |
| Inversion | Chr2 | 8366589 | 8619803 | OsKitaake02g109500 |
| Inversion | Chr2 | 10594203 | 10594347 | |
| Inversion | Chr2 | 10594216 | 10594355 | |
| Inversion | Chr2 | 35719285 | 36376082 | |
| Inversion | Chr2 | 35719294 | 36376092 |