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Mutant Information

Mutant Name	FN1549-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1549-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8552652 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g107100
SBS Chr1 29994110 C-A Hetero UTR_3_PRIME
SBS Chr1 36144115 G-T Hetero INTERGENIC
SBS Chr1 44221516 A-T Hetero START_GAINED
SBS Chr2 31329370 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g321500
SBS Chr2 36446253 A-G Hetero UTR_3_PRIME
SBS Chr2 36757794 A-T Hetero INTERGENIC
SBS Chr3 21454 C-T Homo INTERGENIC
SBS Chr3 25406720 A-C Hetero INTERGENIC
SBS Chr5 6780238 C-T Homo INTRON
SBS Chr5 19289330 A-T Hetero INTRON
SBS Chr5 22075084 A-G Hetero INTERGENIC
SBS Chr6 1206798 T-C Hetero INTERGENIC
SBS Chr6 2252139 G-A Homo INTERGENIC
SBS Chr6 10817490 C-T Hetero INTERGENIC
SBS Chr6 27307604 C-T Homo INTERGENIC
SBS Chr7 1825668 G-C Hetero INTRON
SBS Chr7 28106346 C-A Hetero INTRON
SBS Chr7 28106351 C-A Hetero INTRON
SBS Chr8 12975097 T-C Hetero INTERGENIC
SBS Chr9 5524880 A-C Hetero INTERGENIC
SBS Chr10 5254212 G-C Homo INTERGENIC
SBS Chr11 18307996 G-T Homo INTERGENIC
SBS Chr11 26390306 A-T Homo INTERGENIC
SBS Chr12 9481126 A-T Homo INTERGENIC
SBS Chr12 9481127 G-T Homo INTERGENIC
SBS Chr12 24947268 C-T Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 2097189 2097201 12
Deletion Chr4 2239806 2239811 5
Deletion Chr1 2534779 2534781 2
Deletion Chr2 3610500 3610510 10
Deletion Chr10 5556149 5556154 5
Deletion Chr11 9415566 9415571 5
Deletion Chr6 10098572 10098574 2
Deletion Chr6 11153001 11324000 170999 15
Deletion Chr7 12340679 12340680 1
Deletion Chr11 12708144 12708145 1
Deletion Chr4 13171382 13171383 1
Deletion Chr4 14746261 14746262 1
Deletion Chr2 23168095 23168100 5
Deletion Chr11 25535135 25535142 7
Deletion Chr4 32711985 32711989 4 OsKitaake04g263500
Deletion Chr1 38738560 38738566 6

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 42367388 42367391 2
Insertion Chr11 7413998 7414001 2
Insertion Chr5 30228616 30228624 7
Insertion Chr7 11984659 11984661 1

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 2795887 Chr3 26886301

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8552652	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g107100
SBS	Chr1	29994110	C-A	Hetero	UTR_3_PRIME
SBS	Chr1	36144115	G-T	Hetero	INTERGENIC
SBS	Chr1	44221516	A-T	Hetero	START_GAINED
SBS	Chr2	31329370	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g321500
SBS	Chr2	36446253	A-G	Hetero	UTR_3_PRIME
SBS	Chr2	36757794	A-T	Hetero	INTERGENIC
SBS	Chr3	21454	C-T	Homo	INTERGENIC
SBS	Chr3	25406720	A-C	Hetero	INTERGENIC
SBS	Chr5	6780238	C-T	Homo	INTRON
SBS	Chr5	19289330	A-T	Hetero	INTRON
SBS	Chr5	22075084	A-G	Hetero	INTERGENIC
SBS	Chr6	1206798	T-C	Hetero	INTERGENIC
SBS	Chr6	2252139	G-A	Homo	INTERGENIC
SBS	Chr6	10817490	C-T	Hetero	INTERGENIC
SBS	Chr6	27307604	C-T	Homo	INTERGENIC
SBS	Chr7	1825668	G-C	Hetero	INTRON
SBS	Chr7	28106346	C-A	Hetero	INTRON
SBS	Chr7	28106351	C-A	Hetero	INTRON
SBS	Chr8	12975097	T-C	Hetero	INTERGENIC
SBS	Chr9	5524880	A-C	Hetero	INTERGENIC
SBS	Chr10	5254212	G-C	Homo	INTERGENIC
SBS	Chr11	18307996	G-T	Homo	INTERGENIC
SBS	Chr11	26390306	A-T	Homo	INTERGENIC
SBS	Chr12	9481126	A-T	Homo	INTERGENIC
SBS	Chr12	9481127	G-T	Homo	INTERGENIC
SBS	Chr12	24947268	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	2097189	2097201	12
Deletion	Chr4	2239806	2239811	5
Deletion	Chr1	2534779	2534781	2
Deletion	Chr2	3610500	3610510	10
Deletion	Chr10	5556149	5556154	5
Deletion	Chr11	9415566	9415571	5
Deletion	Chr6	10098572	10098574	2
Deletion	Chr6	11153001	11324000	170999	15
Deletion	Chr7	12340679	12340680	1
Deletion	Chr11	12708144	12708145	1
Deletion	Chr4	13171382	13171383	1
Deletion	Chr4	14746261	14746262	1
Deletion	Chr2	23168095	23168100	5
Deletion	Chr11	25535135	25535142	7
Deletion	Chr4	32711985	32711989	4	OsKitaake04g263500
Deletion	Chr1	38738560	38738566	6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	2795887	Chr3	26886301

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes