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Mutant Information

Mutant Name	FN1550-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1550-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 36249880 C-T Hetero INTRON
SBS Chr1 37362189 G-A Hetero INTERGENIC
SBS Chr1 40410853 T-A Homo NON_SYNONYMOUS_CODING OsKitaake01g438800
SBS Chr2 7375553 C-T Hetero INTERGENIC
SBS Chr2 16541091 G-A Hetero INTERGENIC
SBS Chr2 21498148 C-T Hetero INTERGENIC
SBS Chr2 28755782 A-T Hetero INTERGENIC
SBS Chr2 30351732 C-A Hetero INTERGENIC
SBS Chr2 34110431 A-C Hetero INTERGENIC
SBS Chr3 11729956 G-A Hetero UTR_5_PRIME
SBS Chr4 17458250 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g086600
SBS Chr4 22148564 G-A Homo INTERGENIC
SBS Chr4 22148565 G-A Homo INTERGENIC
SBS Chr4 23803761 G-A Homo INTRON
SBS Chr5 15402359 G-C Hetero INTERGENIC
SBS Chr7 6745236 C-A Homo INTERGENIC
SBS Chr7 16225009 A-C Homo INTERGENIC
SBS Chr8 20241140 A-G Hetero INTERGENIC
SBS Chr8 20241142 C-A Hetero INTERGENIC
SBS Chr8 20455096 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g151700
SBS Chr8 23370231 G-C Hetero INTERGENIC
SBS Chr8 26635110 G-A Homo INTERGENIC
SBS Chr9 1309320 G-A Hetero INTERGENIC
SBS Chr9 2425345 G-C Hetero INTERGENIC
SBS Chr9 4607498 C-T Homo INTERGENIC
SBS Chr9 8851245 G-C Hetero INTERGENIC
SBS Chr10 8933538 C-T Homo INTERGENIC
SBS Chr10 17303733 C-T Homo INTERGENIC
SBS Chr11 312828 T-C Homo INTRON
SBS Chr11 4941222 C-A Homo INTERGENIC
SBS Chr11 10988746 G-A Hetero INTERGENIC
SBS Chr11 12421774 G-T Hetero INTERGENIC
SBS Chr12 11060326 T-C Hetero INTERGENIC
SBS Chr12 13349025 C-A Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 313222 313223 1
Deletion Chr8 3655247 3655275 28
Deletion Chr10 7315724 7315733 9
Deletion Chr9 7901801 7901802 1
Deletion Chr5 9847804 9847809 5
Deletion Chr4 10282001 10333000 50999
Deletion Chr4 10337001 10385000 47999 3
Deletion Chr6 11340870 11340888 18
Deletion Chr9 12576408 12576411 3
Deletion Chr12 13164001 13197000 32999 9
Deletion Chr5 13777752 13777755 3
Deletion Chr1 14477505 14477515 10
Deletion Chr3 20678119 20678124 5
Deletion Chr10 21965236 21965237 1 OsKitaake10g177500
Deletion Chr5 22402422 22402426 4
Deletion Chr3 25345001 25438000 92999 6
Deletion Chr12 25385706 25385708 2 OsKitaake12g207900
Deletion Chr2 29020781 29020785 4
Deletion Chr4 30747391 30747392 1
Deletion Chr3 34434001 34573000 138999 17

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 11501095 11501101 5
Insertion Chr3 4499896 4499900 3
Insertion Chr4 36525594 36525598 3
Insertion Chr5 23268781 23268787 5
Insertion Chr7 11552155 11552158 2
Insertion Chr12 17132497 17132500 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 13776352 13878966

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 13156666 Chr11 24327137
Translocation Chr12 13164922 Chr3 34310964 OsKitaake12g109900
Translocation Chr12 13878683 Chr4 10391851
Translocation Chr12 15291678 Chr3 34436920
Translocation Chr3 34575672 Chr2 7813358

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	36249880	C-T	Hetero	INTRON
SBS	Chr1	37362189	G-A	Hetero	INTERGENIC
SBS	Chr1	40410853	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g438800
SBS	Chr2	7375553	C-T	Hetero	INTERGENIC
SBS	Chr2	16541091	G-A	Hetero	INTERGENIC
SBS	Chr2	21498148	C-T	Hetero	INTERGENIC
SBS	Chr2	28755782	A-T	Hetero	INTERGENIC
SBS	Chr2	30351732	C-A	Hetero	INTERGENIC
SBS	Chr2	34110431	A-C	Hetero	INTERGENIC
SBS	Chr3	11729956	G-A	Hetero	UTR_5_PRIME
SBS	Chr4	17458250	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g086600
SBS	Chr4	22148564	G-A	Homo	INTERGENIC
SBS	Chr4	22148565	G-A	Homo	INTERGENIC
SBS	Chr4	23803761	G-A	Homo	INTRON
SBS	Chr5	15402359	G-C	Hetero	INTERGENIC
SBS	Chr7	6745236	C-A	Homo	INTERGENIC
SBS	Chr7	16225009	A-C	Homo	INTERGENIC
SBS	Chr8	20241140	A-G	Hetero	INTERGENIC
SBS	Chr8	20241142	C-A	Hetero	INTERGENIC
SBS	Chr8	20455096	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g151700
SBS	Chr8	23370231	G-C	Hetero	INTERGENIC
SBS	Chr8	26635110	G-A	Homo	INTERGENIC
SBS	Chr9	1309320	G-A	Hetero	INTERGENIC
SBS	Chr9	2425345	G-C	Hetero	INTERGENIC
SBS	Chr9	4607498	C-T	Homo	INTERGENIC
SBS	Chr9	8851245	G-C	Hetero	INTERGENIC
SBS	Chr10	8933538	C-T	Homo	INTERGENIC
SBS	Chr10	17303733	C-T	Homo	INTERGENIC
SBS	Chr11	312828	T-C	Homo	INTRON
SBS	Chr11	4941222	C-A	Homo	INTERGENIC
SBS	Chr11	10988746	G-A	Hetero	INTERGENIC
SBS	Chr11	12421774	G-T	Hetero	INTERGENIC
SBS	Chr12	11060326	T-C	Hetero	INTERGENIC
SBS	Chr12	13349025	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	313222	313223	1
Deletion	Chr8	3655247	3655275	28
Deletion	Chr10	7315724	7315733	9
Deletion	Chr9	7901801	7901802	1
Deletion	Chr5	9847804	9847809	5
Deletion	Chr4	10282001	10333000	50999
Deletion	Chr4	10337001	10385000	47999	3
Deletion	Chr6	11340870	11340888	18
Deletion	Chr9	12576408	12576411	3
Deletion	Chr12	13164001	13197000	32999	9
Deletion	Chr5	13777752	13777755	3
Deletion	Chr1	14477505	14477515	10
Deletion	Chr3	20678119	20678124	5
Deletion	Chr10	21965236	21965237	1	OsKitaake10g177500
Deletion	Chr5	22402422	22402426	4
Deletion	Chr3	25345001	25438000	92999	6
Deletion	Chr12	25385706	25385708	2	OsKitaake12g207900
Deletion	Chr2	29020781	29020785	4
Deletion	Chr4	30747391	30747392	1
Deletion	Chr3	34434001	34573000	138999	17

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	13776352	13878966

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes