Search Kitaake

Mutant Information

Mutant Name	FN1551-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1551-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 27140369 G-T Homo INTERGENIC
SBS Chr1 42914226 G-A Homo INTERGENIC
SBS Chr2 26800746 C-T Hetero INTRON
SBS Chr3 24106871 T-C Homo INTERGENIC
SBS Chr4 4606369 C-A Hetero INTERGENIC
SBS Chr4 12011350 C-A Homo INTERGENIC
SBS Chr5 3834896 A-G Homo INTRON
SBS Chr5 16617386 G-A Homo INTERGENIC
SBS Chr6 1418765 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g016000
SBS Chr6 6538831 A-G Hetero INTERGENIC
SBS Chr6 19146376 A-G Hetero INTRON
SBS Chr6 23188329 C-A Homo INTERGENIC
SBS Chr6 26748181 G-T Hetero INTERGENIC
SBS Chr7 12216201 G-A Hetero INTERGENIC
SBS Chr7 17228030 T-C Hetero INTERGENIC
SBS Chr7 25824365 T-A Hetero INTERGENIC
SBS Chr7 26918193 C-T Hetero SYNONYMOUS_CODING
SBS Chr11 8144475 A-G Hetero INTERGENIC
SBS Chr11 9910085 T-C Hetero INTERGENIC
SBS Chr11 11518293 C-A Hetero INTERGENIC
SBS Chr11 12436802 T-G Hetero INTERGENIC
SBS Chr12 19070060 C-T Hetero INTERGENIC
SBS Chr12 19847745 T-G Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 176980 176983 3
Deletion Chr6 210730 210735 5
Deletion Chr3 2523769 2523778 9
Deletion Chr4 8693952 8693953 1 OsKitaake04g044600
Deletion Chr11 9086408 9086412 4
Deletion Chr4 10791194 10791201 7
Deletion Chr10 15762366 15762454 88
Deletion Chr1 18495980 18495983 3
Deletion Chr3 23310001 23353000 42999 7
Deletion Chr5 25384139 25384147 8

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 35666599 35666604 4
Insertion Chr7 24802647 24802649 1
Insertion Chr8 29037396 29037399 2
Insertion Chr10 18102000 18102003 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 12341382 12438775
Inversion Chr9 12341386 12438774

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27140369	G-T	Homo	INTERGENIC
SBS	Chr1	42914226	G-A	Homo	INTERGENIC
SBS	Chr2	26800746	C-T	Hetero	INTRON
SBS	Chr3	24106871	T-C	Homo	INTERGENIC
SBS	Chr4	4606369	C-A	Hetero	INTERGENIC
SBS	Chr4	12011350	C-A	Homo	INTERGENIC
SBS	Chr5	3834896	A-G	Homo	INTRON
SBS	Chr5	16617386	G-A	Homo	INTERGENIC
SBS	Chr6	1418765	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g016000
SBS	Chr6	6538831	A-G	Hetero	INTERGENIC
SBS	Chr6	19146376	A-G	Hetero	INTRON
SBS	Chr6	23188329	C-A	Homo	INTERGENIC
SBS	Chr6	26748181	G-T	Hetero	INTERGENIC
SBS	Chr7	12216201	G-A	Hetero	INTERGENIC
SBS	Chr7	17228030	T-C	Hetero	INTERGENIC
SBS	Chr7	25824365	T-A	Hetero	INTERGENIC
SBS	Chr7	26918193	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr11	8144475	A-G	Hetero	INTERGENIC
SBS	Chr11	9910085	T-C	Hetero	INTERGENIC
SBS	Chr11	11518293	C-A	Hetero	INTERGENIC
SBS	Chr11	12436802	T-G	Hetero	INTERGENIC
SBS	Chr12	19070060	C-T	Hetero	INTERGENIC
SBS	Chr12	19847745	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	176980	176983	3
Deletion	Chr6	210730	210735	5
Deletion	Chr3	2523769	2523778	9
Deletion	Chr4	8693952	8693953	1	OsKitaake04g044600
Deletion	Chr11	9086408	9086412	4
Deletion	Chr4	10791194	10791201	7
Deletion	Chr10	15762366	15762454	88
Deletion	Chr1	18495980	18495983	3
Deletion	Chr3	23310001	23353000	42999	7
Deletion	Chr5	25384139	25384147	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	12341382	12438775
Inversion	Chr9	12341386	12438774

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes