Search Kitaake

Mutant Information

Mutant Name	FN1553-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1553-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5540272 C-A Hetero INTERGENIC
SBS Chr1 10683687 C-T Hetero INTRON
SBS Chr2 10031086 C-G Homo UTR_3_PRIME
SBS Chr2 25825726 G-T Homo INTERGENIC
SBS Chr2 25825727 G-T Homo INTERGENIC
SBS Chr2 30048015 A-C Hetero INTRON
SBS Chr2 31807913 A-T Homo INTRON
SBS Chr3 10310847 C-T Hetero INTERGENIC
SBS Chr3 10404276 A-G Hetero INTERGENIC
SBS Chr3 11248748 T-A Hetero INTERGENIC
SBS Chr3 34429636 C-A Homo INTERGENIC
SBS Chr4 1606536 G-A Hetero INTERGENIC
SBS Chr4 4143504 G-A Hetero INTERGENIC
SBS Chr4 20636340 G-A Hetero INTERGENIC
SBS Chr4 23507975 C-T Hetero INTERGENIC
SBS Chr4 27925121 G-C Hetero INTERGENIC
SBS Chr4 27928394 G-T Hetero INTRON
SBS Chr4 27938744 A-T Hetero INTERGENIC
SBS Chr4 30345700 G-T Hetero INTERGENIC
SBS Chr5 1100688 C-A Hetero START_GAINED
SBS Chr6 12571044 G-T Homo NON_SYNONYMOUS_CODING OsKitaake06g134200
SBS Chr6 27309035 C-T Hetero UTR_3_PRIME
SBS Chr7 9415512 T-G Hetero INTERGENIC
SBS Chr7 18864556 A-T Homo INTERGENIC
SBS Chr8 237011 G-C Hetero INTERGENIC
SBS Chr8 2281120 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g027000
SBS Chr8 19130391 T-G Hetero INTERGENIC
SBS Chr9 5020524 G-A Hetero INTERGENIC
SBS Chr9 17209900 C-T Hetero UTR_3_PRIME
SBS Chr9 20952544 G-A Hetero INTERGENIC
SBS Chr10 13869680 A-G Hetero INTRON
SBS Chr11 21381720 T-C Hetero INTERGENIC
SBS Chr12 2641438 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake12g038900
SBS Chr12 23812618 C-G Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1360114 1360116 2 OsKitaake11g017200
Deletion Chr4 8445099 8445100 1
Deletion Chr3 14414001 14454000 39999 2
Deletion Chr11 15941291 15941293 2
Deletion Chr11 20138634 20138731 97
Deletion Chr7 22351401 22351408 7 OsKitaake07g189300
Deletion Chr5 23738953 23738972 19
Deletion Chr11 24149142 24149146 4
Deletion Chr5 24248001 24347000 98999 12
Deletion Chr7 29137001 29288000 150999 31
Deletion Chr2 35762651 35762659 8

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 28849671 28849673 1
Insertion Chr4 2917658 2917660 1
Insertion Chr4 18297099 18297101 1
Insertion Chr6 31040491 31040526 34

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 5099477 5584703 OsKitaake09g032133
Inversion Chr9 5099482 5584707 OsKitaake09g032133

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5540272	C-A	Hetero	INTERGENIC
SBS	Chr1	10683687	C-T	Hetero	INTRON
SBS	Chr2	10031086	C-G	Homo	UTR_3_PRIME
SBS	Chr2	25825726	G-T	Homo	INTERGENIC
SBS	Chr2	25825727	G-T	Homo	INTERGENIC
SBS	Chr2	30048015	A-C	Hetero	INTRON
SBS	Chr2	31807913	A-T	Homo	INTRON
SBS	Chr3	10310847	C-T	Hetero	INTERGENIC
SBS	Chr3	10404276	A-G	Hetero	INTERGENIC
SBS	Chr3	11248748	T-A	Hetero	INTERGENIC
SBS	Chr3	34429636	C-A	Homo	INTERGENIC
SBS	Chr4	1606536	G-A	Hetero	INTERGENIC
SBS	Chr4	4143504	G-A	Hetero	INTERGENIC
SBS	Chr4	20636340	G-A	Hetero	INTERGENIC
SBS	Chr4	23507975	C-T	Hetero	INTERGENIC
SBS	Chr4	27925121	G-C	Hetero	INTERGENIC
SBS	Chr4	27928394	G-T	Hetero	INTRON
SBS	Chr4	27938744	A-T	Hetero	INTERGENIC
SBS	Chr4	30345700	G-T	Hetero	INTERGENIC
SBS	Chr5	1100688	C-A	Hetero	START_GAINED
SBS	Chr6	12571044	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g134200
SBS	Chr6	27309035	C-T	Hetero	UTR_3_PRIME
SBS	Chr7	9415512	T-G	Hetero	INTERGENIC
SBS	Chr7	18864556	A-T	Homo	INTERGENIC
SBS	Chr8	237011	G-C	Hetero	INTERGENIC
SBS	Chr8	2281120	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g027000
SBS	Chr8	19130391	T-G	Hetero	INTERGENIC
SBS	Chr9	5020524	G-A	Hetero	INTERGENIC
SBS	Chr9	17209900	C-T	Hetero	UTR_3_PRIME
SBS	Chr9	20952544	G-A	Hetero	INTERGENIC
SBS	Chr10	13869680	A-G	Hetero	INTRON
SBS	Chr11	21381720	T-C	Hetero	INTERGENIC
SBS	Chr12	2641438	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g038900
SBS	Chr12	23812618	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1360114	1360116	2	OsKitaake11g017200
Deletion	Chr4	8445099	8445100	1
Deletion	Chr3	14414001	14454000	39999	2
Deletion	Chr11	15941291	15941293	2
Deletion	Chr11	20138634	20138731	97
Deletion	Chr7	22351401	22351408	7	OsKitaake07g189300
Deletion	Chr5	23738953	23738972	19
Deletion	Chr11	24149142	24149146	4
Deletion	Chr5	24248001	24347000	98999	12
Deletion	Chr7	29137001	29288000	150999	31
Deletion	Chr2	35762651	35762659	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	5099477	5584703	OsKitaake09g032133
Inversion	Chr9	5099482	5584707	OsKitaake09g032133

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes