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Mutant Information

Mutant Name	FN1555-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1555-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 17

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 34914059 G-T Hetero INTERGENIC
SBS Chr3 8654025 A-T Hetero INTERGENIC
SBS Chr3 8654027 A-T Hetero INTERGENIC
SBS Chr3 34412627 G-A Homo INTERGENIC
SBS Chr4 1432572 G-A Homo INTERGENIC
SBS Chr4 9675217 A-C Homo INTERGENIC
SBS Chr4 17581837 T-C Homo INTERGENIC
SBS Chr5 854656 G-A Homo NON_SYNONYMOUS_CODING OsKitaake05g010400
SBS Chr5 854657 C-G Homo NON_SYNONYMOUS_CODING OsKitaake05g010400
SBS Chr5 29518186 A-G Hetero INTERGENIC
SBS Chr6 30666891 A-T Homo INTRON
SBS Chr8 21002408 G-A Homo INTERGENIC
SBS Chr9 3491725 C-T Hetero INTRON
SBS Chr10 4244096 C-A Hetero INTERGENIC
SBS Chr11 18775308 G-A Homo INTRON
SBS Chr11 28815804 G-A Hetero INTERGENIC
SBS Chr11 29377205 T-C Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 1585216 1585220 4
Deletion Chr4 1922503 1922504 1
Deletion Chr9 4550899 4550902 3
Deletion Chr9 5452001 5501000 48999 4
Deletion Chr3 6935001 7321000 385999 51
Deletion Chr5 8007662 8007665 3
Deletion Chr4 8824187 8824188 1
Deletion Chr3 12099635 12099639 4
Deletion Chr5 12196928 12196933 5
Deletion Chr9 14822080 14822090 10
Deletion Chr10 17913262 17913269 7
Deletion Chr6 19468495 19468500 5
Deletion Chr6 24230991 24230998 7
Deletion Chr11 26916540 26916548 8
Deletion Chr6 27167747 27167759 12
Deletion Chr6 27375832 27375837 5 OsKitaake06g246900

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 956937 956940 2
Insertion Chr8 24269047 24269050 2
Insertion Chr8 1396065 1396067 1

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 18815799 Chr1 8195213 OsKitaake05g146800
Translocation Chr5 20180892 Chr4 34409438 OsKitaake05g160800
Translocation Chr5 20180902 Chr4 34409897 OsKitaake05g160800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	34914059	G-T	Hetero	INTERGENIC
SBS	Chr3	8654025	A-T	Hetero	INTERGENIC
SBS	Chr3	8654027	A-T	Hetero	INTERGENIC
SBS	Chr3	34412627	G-A	Homo	INTERGENIC
SBS	Chr4	1432572	G-A	Homo	INTERGENIC
SBS	Chr4	9675217	A-C	Homo	INTERGENIC
SBS	Chr4	17581837	T-C	Homo	INTERGENIC
SBS	Chr5	854656	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g010400
SBS	Chr5	854657	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g010400
SBS	Chr5	29518186	A-G	Hetero	INTERGENIC
SBS	Chr6	30666891	A-T	Homo	INTRON
SBS	Chr8	21002408	G-A	Homo	INTERGENIC
SBS	Chr9	3491725	C-T	Hetero	INTRON
SBS	Chr10	4244096	C-A	Hetero	INTERGENIC
SBS	Chr11	18775308	G-A	Homo	INTRON
SBS	Chr11	28815804	G-A	Hetero	INTERGENIC
SBS	Chr11	29377205	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	1585216	1585220	4
Deletion	Chr4	1922503	1922504	1
Deletion	Chr9	4550899	4550902	3
Deletion	Chr9	5452001	5501000	48999	4
Deletion	Chr3	6935001	7321000	385999	51
Deletion	Chr5	8007662	8007665	3
Deletion	Chr4	8824187	8824188	1
Deletion	Chr3	12099635	12099639	4
Deletion	Chr5	12196928	12196933	5
Deletion	Chr9	14822080	14822090	10
Deletion	Chr10	17913262	17913269	7
Deletion	Chr6	19468495	19468500	5
Deletion	Chr6	24230991	24230998	7
Deletion	Chr11	26916540	26916548	8
Deletion	Chr6	27167747	27167759	12
Deletion	Chr6	27375832	27375837	5	OsKitaake06g246900

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	18815799	Chr1	8195213	OsKitaake05g146800
Translocation	Chr5	20180892	Chr4	34409438	OsKitaake05g160800
Translocation	Chr5	20180902	Chr4	34409897	OsKitaake05g160800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes