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Mutant Information

Mutant Name	FN1556-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1556-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16382236 G-A Homo INTRON
SBS Chr1 23146494 A-T Hetero INTERGENIC
SBS Chr1 29765450 C-T Homo INTERGENIC
SBS Chr2 13062353 A-G Homo INTERGENIC
SBS Chr3 3086264 A-T Hetero INTERGENIC
SBS Chr3 3086265 A-T Hetero INTERGENIC
SBS Chr3 3086266 A-T Hetero INTERGENIC
SBS Chr3 12292502 T-A Hetero INTERGENIC
SBS Chr3 19105757 G-C Homo INTERGENIC
SBS Chr4 4299423 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake04g021300
SBS Chr4 13683192 G-A Hetero INTERGENIC
SBS Chr4 14062370 A-G Hetero INTERGENIC
SBS Chr4 17054177 G-A Hetero INTERGENIC
SBS Chr4 20390290 G-A Hetero UTR_3_PRIME
SBS Chr4 24122940 G-A Hetero INTRON
SBS Chr6 2873646 A-C Hetero INTERGENIC
SBS Chr7 2387509 A-G Homo INTRON
SBS Chr7 17694399 C-T Homo INTERGENIC
SBS Chr8 3974620 C-T Hetero INTRON
SBS Chr8 15565946 G-A Homo INTERGENIC
SBS Chr8 18924905 C-A Homo INTRON
SBS Chr8 19606394 G-C Homo INTERGENIC
SBS Chr10 2360986 G-A Homo INTERGENIC
SBS Chr11 21486198 C-T Hetero INTERGENIC
SBS Chr11 28764166 C-A Hetero INTERGENIC
SBS Chr12 10156162 C-T Hetero INTERGENIC
SBS Chr12 13582459 C-A Hetero INTERGENIC
SBS Chr12 13582460 T-A Hetero INTERGENIC
SBS Chr12 13697143 T-A Hetero INTRON
SBS Chr12 14604718 T-C Hetero INTERGENIC
SBS Chr12 16944075 G-A Hetero INTERGENIC
SBS Chr12 19512474 G-A Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 63619 63620 1
Deletion Chr5 2408657 2408658 1
Deletion Chr7 5163652 5163663 11
Deletion Chr7 7979971 7979980 9
Deletion Chr2 13481574 13481579 5
Deletion Chr5 13803476 13803488 12
Deletion Chr4 14183084 14183085 1
Deletion Chr4 14336373 14336377 4
Deletion Chr2 14649145 14649146 1
Deletion Chr4 16055895 16055897 2
Deletion Chr3 18556845 18556851 6
Deletion Chr6 20439001 20567000 127999 11
Deletion Chr6 20743001 20944000 200999 13
Deletion Chr5 24619042 24619043 1
Deletion Chr2 27293912 27293914 2
Deletion Chr8 28506548 28506550 2
Deletion Chr6 28935922 28935926 4
Deletion Chr5 29850797 29850800 3 OsKitaake05g285800
Deletion Chr2 35390344 35390354 10 OsKitaake02g371100

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 30082250 30082253 2
Insertion Chr2 10324700 10324702 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 5821861 5829238
Inversion Chr5 5821869 5829241
Inversion Chr6 6343211 6389188
Inversion Chr6 6343214 6389187

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 1043919 Chr1 12016660
Translocation Chr12 1043927 Chr1 12017622

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16382236	G-A	Homo	INTRON
SBS	Chr1	23146494	A-T	Hetero	INTERGENIC
SBS	Chr1	29765450	C-T	Homo	INTERGENIC
SBS	Chr2	13062353	A-G	Homo	INTERGENIC
SBS	Chr3	3086264	A-T	Hetero	INTERGENIC
SBS	Chr3	3086265	A-T	Hetero	INTERGENIC
SBS	Chr3	3086266	A-T	Hetero	INTERGENIC
SBS	Chr3	12292502	T-A	Hetero	INTERGENIC
SBS	Chr3	19105757	G-C	Homo	INTERGENIC
SBS	Chr4	4299423	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g021300
SBS	Chr4	13683192	G-A	Hetero	INTERGENIC
SBS	Chr4	14062370	A-G	Hetero	INTERGENIC
SBS	Chr4	17054177	G-A	Hetero	INTERGENIC
SBS	Chr4	20390290	G-A	Hetero	UTR_3_PRIME
SBS	Chr4	24122940	G-A	Hetero	INTRON
SBS	Chr6	2873646	A-C	Hetero	INTERGENIC
SBS	Chr7	2387509	A-G	Homo	INTRON
SBS	Chr7	17694399	C-T	Homo	INTERGENIC
SBS	Chr8	3974620	C-T	Hetero	INTRON
SBS	Chr8	15565946	G-A	Homo	INTERGENIC
SBS	Chr8	18924905	C-A	Homo	INTRON
SBS	Chr8	19606394	G-C	Homo	INTERGENIC
SBS	Chr10	2360986	G-A	Homo	INTERGENIC
SBS	Chr11	21486198	C-T	Hetero	INTERGENIC
SBS	Chr11	28764166	C-A	Hetero	INTERGENIC
SBS	Chr12	10156162	C-T	Hetero	INTERGENIC
SBS	Chr12	13582459	C-A	Hetero	INTERGENIC
SBS	Chr12	13582460	T-A	Hetero	INTERGENIC
SBS	Chr12	13697143	T-A	Hetero	INTRON
SBS	Chr12	14604718	T-C	Hetero	INTERGENIC
SBS	Chr12	16944075	G-A	Hetero	INTERGENIC
SBS	Chr12	19512474	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	63619	63620	1
Deletion	Chr5	2408657	2408658	1
Deletion	Chr7	5163652	5163663	11
Deletion	Chr7	7979971	7979980	9
Deletion	Chr2	13481574	13481579	5
Deletion	Chr5	13803476	13803488	12
Deletion	Chr4	14183084	14183085	1
Deletion	Chr4	14336373	14336377	4
Deletion	Chr2	14649145	14649146	1
Deletion	Chr4	16055895	16055897	2
Deletion	Chr3	18556845	18556851	6
Deletion	Chr6	20439001	20567000	127999	11
Deletion	Chr6	20743001	20944000	200999	13
Deletion	Chr5	24619042	24619043	1
Deletion	Chr2	27293912	27293914	2
Deletion	Chr8	28506548	28506550	2
Deletion	Chr6	28935922	28935926	4
Deletion	Chr5	29850797	29850800	3	OsKitaake05g285800
Deletion	Chr2	35390344	35390354	10	OsKitaake02g371100

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	5821861	5829238
Inversion	Chr5	5821869	5829241
Inversion	Chr6	6343211	6389188
Inversion	Chr6	6343214	6389187

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes