Search Kitaake

Mutant Information

Mutant Name	FN1557-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1557-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10816459 A-T Hetero INTERGENIC
SBS Chr1 12368329 G-A Hetero INTERGENIC
SBS Chr1 41386773 G-C Hetero INTERGENIC
SBS Chr2 21864053 G-A Hetero INTERGENIC
SBS Chr2 22938062 T-A Hetero INTERGENIC
SBS Chr2 25996192 T-C Hetero INTRON
SBS Chr2 27590214 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 27590215 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g277400
SBS Chr3 392817 A-G Homo INTERGENIC
SBS Chr3 28276066 C-T Homo INTERGENIC
SBS Chr4 218694 T-C Hetero INTERGENIC
SBS Chr4 404292 C-A Hetero INTERGENIC
SBS Chr4 406296 C-T Hetero STOP_GAINED OsKitaake04g002800
SBS Chr4 1788359 C-T Homo INTERGENIC
SBS Chr4 3566723 G-A Hetero INTERGENIC
SBS Chr4 9131782 G-C Hetero INTERGENIC
SBS Chr4 9885052 G-A Homo INTERGENIC
SBS Chr4 13851666 G-T Hetero INTERGENIC
SBS Chr4 13851667 G-T Hetero INTERGENIC
SBS Chr4 24549603 G-T Hetero INTERGENIC
SBS Chr4 29429010 T-G Hetero INTRON
SBS Chr4 36698368 G-A Hetero INTERGENIC
SBS Chr5 4900484 T-A Hetero INTERGENIC
SBS Chr5 5546328 A-T Hetero INTERGENIC
SBS Chr5 19281192 G-A Hetero INTERGENIC
SBS Chr5 19281193 G-T Hetero INTERGENIC
SBS Chr6 12130989 A-G Hetero INTRON
SBS Chr6 16807167 C-A Hetero INTERGENIC
SBS Chr6 21406341 C-T Hetero INTERGENIC
SBS Chr6 22088765 G-A Hetero INTERGENIC
SBS Chr7 15782368 C-T Homo INTERGENIC
SBS Chr7 22798110 G-A Homo INTERGENIC
SBS Chr8 5053 T-C Hetero INTERGENIC
SBS Chr8 8373746 T-C Hetero INTERGENIC
SBS Chr8 11168458 A-G Hetero INTERGENIC
SBS Chr8 15833145 C-T Hetero INTERGENIC
SBS Chr9 7060859 T-C Homo INTERGENIC
SBS Chr9 17346702 T-G Hetero INTERGENIC
SBS Chr9 18563805 G-A Hetero INTERGENIC
SBS Chr10 7087159 G-A Homo INTERGENIC
SBS Chr10 21440038 C-T Homo INTERGENIC
SBS Chr11 194972 C-T Hetero INTERGENIC
SBS Chr11 6371397 T-C Hetero INTERGENIC
SBS Chr11 11417771 T-C Homo INTRON
SBS Chr11 11558276 A-G Homo INTRON
SBS Chr11 26323725 C-G Homo NON_SYNONYMOUS_CODING OsKitaake11g213100
SBS Chr11 27228284 A-G Homo UTR_3_PRIME
SBS Chr12 8053254 C-T Hetero INTERGENIC
SBS Chr12 8165846 C-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 320001 330000 9999
Deletion Chr3 390381 390388 7
Deletion Chr9 1525001 1533000 7999
Deletion Chr10 6151129 6151130 1
Deletion Chr9 8153133 8153143 10
Deletion Chr1 9950796 9950797 1
Deletion Chr10 12174034 12174044 10
Deletion Chr9 16899441 16899442 1
Deletion Chr7 17313938 17313946 8
Deletion Chr1 22537776 22537778 2
Deletion Chr11 24565665 24565667 2
Deletion Chr1 30752828 30752829 1
Deletion Chr1 39199001 39246000 46999 6

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 15190838 15190841 2
Insertion Chr3 1726571 1726576 4
Insertion Chr4 5483461 5483464 2
Insertion Chr4 10304530 10304532 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 387356 748432
Inversion Chr9 961693 965222
Inversion Chr6 11697410 12654982

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr2 27348937 Chr1 39329991
Translocation Chr2 27353154 Chr1 39329982 OsKitaake02g274700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10816459	A-T	Hetero	INTERGENIC
SBS	Chr1	12368329	G-A	Hetero	INTERGENIC
SBS	Chr1	41386773	G-C	Hetero	INTERGENIC
SBS	Chr2	21864053	G-A	Hetero	INTERGENIC
SBS	Chr2	22938062	T-A	Hetero	INTERGENIC
SBS	Chr2	25996192	T-C	Hetero	INTRON
SBS	Chr2	27590214	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	27590215	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g277400
SBS	Chr3	392817	A-G	Homo	INTERGENIC
SBS	Chr3	28276066	C-T	Homo	INTERGENIC
SBS	Chr4	218694	T-C	Hetero	INTERGENIC
SBS	Chr4	404292	C-A	Hetero	INTERGENIC
SBS	Chr4	406296	C-T	Hetero	STOP_GAINED	OsKitaake04g002800
SBS	Chr4	1788359	C-T	Homo	INTERGENIC
SBS	Chr4	3566723	G-A	Hetero	INTERGENIC
SBS	Chr4	9131782	G-C	Hetero	INTERGENIC
SBS	Chr4	9885052	G-A	Homo	INTERGENIC
SBS	Chr4	13851666	G-T	Hetero	INTERGENIC
SBS	Chr4	13851667	G-T	Hetero	INTERGENIC
SBS	Chr4	24549603	G-T	Hetero	INTERGENIC
SBS	Chr4	29429010	T-G	Hetero	INTRON
SBS	Chr4	36698368	G-A	Hetero	INTERGENIC
SBS	Chr5	4900484	T-A	Hetero	INTERGENIC
SBS	Chr5	5546328	A-T	Hetero	INTERGENIC
SBS	Chr5	19281192	G-A	Hetero	INTERGENIC
SBS	Chr5	19281193	G-T	Hetero	INTERGENIC
SBS	Chr6	12130989	A-G	Hetero	INTRON
SBS	Chr6	16807167	C-A	Hetero	INTERGENIC
SBS	Chr6	21406341	C-T	Hetero	INTERGENIC
SBS	Chr6	22088765	G-A	Hetero	INTERGENIC
SBS	Chr7	15782368	C-T	Homo	INTERGENIC
SBS	Chr7	22798110	G-A	Homo	INTERGENIC
SBS	Chr8	5053	T-C	Hetero	INTERGENIC
SBS	Chr8	8373746	T-C	Hetero	INTERGENIC
SBS	Chr8	11168458	A-G	Hetero	INTERGENIC
SBS	Chr8	15833145	C-T	Hetero	INTERGENIC
SBS	Chr9	7060859	T-C	Homo	INTERGENIC
SBS	Chr9	17346702	T-G	Hetero	INTERGENIC
SBS	Chr9	18563805	G-A	Hetero	INTERGENIC
SBS	Chr10	7087159	G-A	Homo	INTERGENIC
SBS	Chr10	21440038	C-T	Homo	INTERGENIC
SBS	Chr11	194972	C-T	Hetero	INTERGENIC
SBS	Chr11	6371397	T-C	Hetero	INTERGENIC
SBS	Chr11	11417771	T-C	Homo	INTRON
SBS	Chr11	11558276	A-G	Homo	INTRON
SBS	Chr11	26323725	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g213100
SBS	Chr11	27228284	A-G	Homo	UTR_3_PRIME
SBS	Chr12	8053254	C-T	Hetero	INTERGENIC
SBS	Chr12	8165846	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	320001	330000	9999
Deletion	Chr3	390381	390388	7
Deletion	Chr9	1525001	1533000	7999
Deletion	Chr10	6151129	6151130	1
Deletion	Chr9	8153133	8153143	10
Deletion	Chr1	9950796	9950797	1
Deletion	Chr10	12174034	12174044	10
Deletion	Chr9	16899441	16899442	1
Deletion	Chr7	17313938	17313946	8
Deletion	Chr1	22537776	22537778	2
Deletion	Chr11	24565665	24565667	2
Deletion	Chr1	30752828	30752829	1
Deletion	Chr1	39199001	39246000	46999	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	387356	748432
Inversion	Chr9	961693	965222
Inversion	Chr6	11697410	12654982

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes