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Mutant Information

Mutant Name	FN1563-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1563-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9452809 T-G Homo SYNONYMOUS_CODING
SBS Chr1 18315851 A-T Homo INTRON
SBS Chr1 28926420 G-A Hetero INTERGENIC
SBS Chr1 34934550 G-A Homo INTERGENIC
SBS Chr1 37864532 C-T Homo INTERGENIC
SBS Chr2 2172996 A-G Homo INTERGENIC
SBS Chr2 2172998 T-A Homo INTERGENIC
SBS Chr2 30256737 T-C Homo NON_SYNONYMOUS_CODING OsKitaake02g308100
SBS Chr2 30256738 C-A Homo SYNONYMOUS_CODING
SBS Chr3 11865910 T-C Hetero UTR_5_PRIME
SBS Chr3 13936220 C-T Hetero INTRON
SBS Chr3 19305177 C-T Homo INTERGENIC
SBS Chr3 28147618 T-A Homo INTERGENIC
SBS Chr4 13771081 G-A Hetero INTERGENIC
SBS Chr4 20970154 G-T Homo INTERGENIC
SBS Chr5 2190835 A-G Homo INTERGENIC
SBS Chr5 23846000 T-C Hetero INTERGENIC
SBS Chr6 8909563 G-A Hetero INTERGENIC
SBS Chr6 15849468 G-A Homo INTERGENIC
SBS Chr7 6772903 C-T Homo INTERGENIC
SBS Chr7 10404372 G-A Homo INTERGENIC
SBS Chr7 13038454 C-T Homo INTERGENIC
SBS Chr8 7966990 G-A Hetero INTERGENIC
SBS Chr8 10545086 G-A Hetero INTERGENIC
SBS Chr10 9702286 A-T Homo INTERGENIC
SBS Chr10 12793422 G-A Homo INTERGENIC
SBS Chr11 15367004 A-G Homo INTERGENIC
SBS Chr11 17344317 G-A Homo INTERGENIC
SBS Chr11 26316315 G-A Homo UTR_3_PRIME
SBS Chr12 26762547 C-T Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 2095995 2095999 4
Deletion Chr6 4236202 4236205 3
Deletion Chr2 4722335 4722336 1
Deletion Chr12 12590001 12615000 24999 5
Deletion Chr3 16739732 16739904 172
Deletion Chr2 18362384 18362386 2
Deletion Chr7 18588588 18588595 7
Deletion Chr3 20224001 20366000 141999 OsKitaake03g230700
Deletion Chr1 20313231 20313232 1
Deletion Chr8 20795775 20795777 2
Deletion Chr5 28049811 28049819 8
Deletion Chr1 36931235 36931237 2

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 27872045 27872048 2
Insertion Chr1 36723632 36723635 2
Insertion Chr6 9178586 9178589 2
Insertion Chr6 16356637 16356640 2
Insertion Chr7 28346703 28346706 2
Insertion Chr9 14860235 14860238 2
Insertion Chr3 19260759 19260763 3
Insertion Chr9 11423034 11423037 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 2230601 2395770
Inversion Chr8 2230604 2395771
Inversion Chr3 20078353 20221109 OsKitaake03g230201
Inversion Chr3 20080786 20374448 OsKitaake03g230201
Inversion Chr12 24397949 24467874
Inversion Chr12 24397951 24467874

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 6616673 Chr3 20080780 OsKitaake03g230201
Translocation Chr5 6616678 Chr3 20078381 OsKitaake03g230201

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9452809	T-G	Homo	SYNONYMOUS_CODING
SBS	Chr1	18315851	A-T	Homo	INTRON
SBS	Chr1	28926420	G-A	Hetero	INTERGENIC
SBS	Chr1	34934550	G-A	Homo	INTERGENIC
SBS	Chr1	37864532	C-T	Homo	INTERGENIC
SBS	Chr2	2172996	A-G	Homo	INTERGENIC
SBS	Chr2	2172998	T-A	Homo	INTERGENIC
SBS	Chr2	30256737	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g308100
SBS	Chr2	30256738	C-A	Homo	SYNONYMOUS_CODING
SBS	Chr3	11865910	T-C	Hetero	UTR_5_PRIME
SBS	Chr3	13936220	C-T	Hetero	INTRON
SBS	Chr3	19305177	C-T	Homo	INTERGENIC
SBS	Chr3	28147618	T-A	Homo	INTERGENIC
SBS	Chr4	13771081	G-A	Hetero	INTERGENIC
SBS	Chr4	20970154	G-T	Homo	INTERGENIC
SBS	Chr5	2190835	A-G	Homo	INTERGENIC
SBS	Chr5	23846000	T-C	Hetero	INTERGENIC
SBS	Chr6	8909563	G-A	Hetero	INTERGENIC
SBS	Chr6	15849468	G-A	Homo	INTERGENIC
SBS	Chr7	6772903	C-T	Homo	INTERGENIC
SBS	Chr7	10404372	G-A	Homo	INTERGENIC
SBS	Chr7	13038454	C-T	Homo	INTERGENIC
SBS	Chr8	7966990	G-A	Hetero	INTERGENIC
SBS	Chr8	10545086	G-A	Hetero	INTERGENIC
SBS	Chr10	9702286	A-T	Homo	INTERGENIC
SBS	Chr10	12793422	G-A	Homo	INTERGENIC
SBS	Chr11	15367004	A-G	Homo	INTERGENIC
SBS	Chr11	17344317	G-A	Homo	INTERGENIC
SBS	Chr11	26316315	G-A	Homo	UTR_3_PRIME
SBS	Chr12	26762547	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	2095995	2095999	4
Deletion	Chr6	4236202	4236205	3
Deletion	Chr2	4722335	4722336	1
Deletion	Chr12	12590001	12615000	24999	5
Deletion	Chr3	16739732	16739904	172
Deletion	Chr2	18362384	18362386	2
Deletion	Chr7	18588588	18588595	7
Deletion	Chr3	20224001	20366000	141999	OsKitaake03g230700
Deletion	Chr1	20313231	20313232	1
Deletion	Chr8	20795775	20795777	2
Deletion	Chr5	28049811	28049819	8
Deletion	Chr1	36931235	36931237	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	2230601	2395770
Inversion	Chr8	2230604	2395771
Inversion	Chr3	20078353	20221109	OsKitaake03g230201
Inversion	Chr3	20080786	20374448	OsKitaake03g230201
Inversion	Chr12	24397949	24467874
Inversion	Chr12	24397951	24467874

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes