Search Kitaake

Mutant Information

Mutant Name	FN1565-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1565-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (20% Albino) TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9279672 C-T Hetero INTRON
SBS Chr1 32106783 T-C Hetero INTERGENIC
SBS Chr2 13987691 G-A Hetero INTERGENIC
SBS Chr2 15335598 A-G Hetero INTERGENIC
SBS Chr3 1453934 G-A Hetero SYNONYMOUS_CODING
SBS Chr3 1453935 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g020600
SBS Chr3 5197390 G-A Hetero INTERGENIC
SBS Chr3 25238633 C-T Hetero INTRON
SBS Chr3 26343084 G-A Homo INTERGENIC
SBS Chr3 26344366 T-A Homo INTERGENIC
SBS Chr4 14663868 C-T Hetero INTRON
SBS Chr4 30856794 T-A Hetero SPLICE_SITE_REGION
SBS Chr5 1216821 A-C Homo INTERGENIC
SBS Chr5 8272651 T-C Hetero INTERGENIC
SBS Chr5 9736265 A-T Hetero INTERGENIC
SBS Chr5 17773250 C-A Hetero INTERGENIC
SBS Chr6 1574735 G-A Homo NON_SYNONYMOUS_CODING OsKitaake06g018600
SBS Chr6 8145747 G-A Hetero INTERGENIC
SBS Chr6 10925807 A-T Hetero SYNONYMOUS_CODING
SBS Chr6 13674584 C-T Hetero INTERGENIC
SBS Chr6 16135770 G-A Hetero INTERGENIC
SBS Chr6 25956515 A-G Hetero INTERGENIC
SBS Chr6 26733531 A-T Hetero INTERGENIC
SBS Chr7 7174965 C-T Hetero INTERGENIC
SBS Chr7 11620650 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g108000
SBS Chr7 18100211 G-T Hetero INTERGENIC
SBS Chr7 26041828 T-C Hetero INTERGENIC
SBS Chr7 27765133 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g259200
SBS Chr8 6708469 G-A Homo INTERGENIC
SBS Chr8 18476761 T-A Hetero INTERGENIC
SBS Chr10 14483154 C-A Hetero INTRON
SBS Chr11 10902647 G-T Hetero INTRON
SBS Chr11 12275032 T-G Hetero INTRON
SBS Chr11 12497382 A-G Hetero INTERGENIC
SBS Chr12 9669527 T-C Hetero INTERGENIC
SBS Chr12 14079296 C-T Homo INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 332552 332553 1
Deletion Chr5 1652271 1652285 14 OsKitaake05g018900
Deletion Chr9 5114288 5114434 146
Deletion Chr5 6311519 6311521 2
Deletion Chr9 9473609 9473612 3
Deletion Chr12 15068365 15068366 1
Deletion Chr5 21640001 21680000 39999 4
Deletion Chr7 24061617 24061630 13
Deletion Chr7 24138103 24138107 4
Deletion Chr5 25299891 25299905 14

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 10234294 10234297 2
Insertion Chr1 22930835 22930839 3
Insertion Chr1 39836220 39836223 2
Insertion Chr5 13410702 13410705 2
Insertion Chr7 3416576 3416579 2
Insertion Chr3 6885482 6885485 2 OsKitaake03g097400
Insertion Chr5 12532511 12532513 1
Insertion Chr6 18389 18391 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 36350477 36550084 OsKitaake04g315500
Inversion Chr1 41940043 42052116 OsKitaake01g461800
Inversion Chr1 41940045 42052115 OsKitaake01g461800

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 19850439 Chr1 19233024

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9279672	C-T	Hetero	INTRON
SBS	Chr1	32106783	T-C	Hetero	INTERGENIC
SBS	Chr2	13987691	G-A	Hetero	INTERGENIC
SBS	Chr2	15335598	A-G	Hetero	INTERGENIC
SBS	Chr3	1453934	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	1453935	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g020600
SBS	Chr3	5197390	G-A	Hetero	INTERGENIC
SBS	Chr3	25238633	C-T	Hetero	INTRON
SBS	Chr3	26343084	G-A	Homo	INTERGENIC
SBS	Chr3	26344366	T-A	Homo	INTERGENIC
SBS	Chr4	14663868	C-T	Hetero	INTRON
SBS	Chr4	30856794	T-A	Hetero	SPLICE_SITE_REGION
SBS	Chr5	1216821	A-C	Homo	INTERGENIC
SBS	Chr5	8272651	T-C	Hetero	INTERGENIC
SBS	Chr5	9736265	A-T	Hetero	INTERGENIC
SBS	Chr5	17773250	C-A	Hetero	INTERGENIC
SBS	Chr6	1574735	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g018600
SBS	Chr6	8145747	G-A	Hetero	INTERGENIC
SBS	Chr6	10925807	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	13674584	C-T	Hetero	INTERGENIC
SBS	Chr6	16135770	G-A	Hetero	INTERGENIC
SBS	Chr6	25956515	A-G	Hetero	INTERGENIC
SBS	Chr6	26733531	A-T	Hetero	INTERGENIC
SBS	Chr7	7174965	C-T	Hetero	INTERGENIC
SBS	Chr7	11620650	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g108000
SBS	Chr7	18100211	G-T	Hetero	INTERGENIC
SBS	Chr7	26041828	T-C	Hetero	INTERGENIC
SBS	Chr7	27765133	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g259200
SBS	Chr8	6708469	G-A	Homo	INTERGENIC
SBS	Chr8	18476761	T-A	Hetero	INTERGENIC
SBS	Chr10	14483154	C-A	Hetero	INTRON
SBS	Chr11	10902647	G-T	Hetero	INTRON
SBS	Chr11	12275032	T-G	Hetero	INTRON
SBS	Chr11	12497382	A-G	Hetero	INTERGENIC
SBS	Chr12	9669527	T-C	Hetero	INTERGENIC
SBS	Chr12	14079296	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	332552	332553	1
Deletion	Chr5	1652271	1652285	14	OsKitaake05g018900
Deletion	Chr9	5114288	5114434	146
Deletion	Chr5	6311519	6311521	2
Deletion	Chr9	9473609	9473612	3
Deletion	Chr12	15068365	15068366	1
Deletion	Chr5	21640001	21680000	39999	4
Deletion	Chr7	24061617	24061630	13
Deletion	Chr7	24138103	24138107	4
Deletion	Chr5	25299891	25299905	14

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	36350477	36550084	OsKitaake04g315500
Inversion	Chr1	41940043	42052116	OsKitaake01g461800
Inversion	Chr1	41940045	42052115	OsKitaake01g461800

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes