Search Kitaake

Mutant Information

Mutant Name	FN1566-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1566-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2701324 T-A Homo NON_SYNONYMOUS_CODING OsKitaake01g033800
SBS Chr1 7237472 T-C Homo INTERGENIC
SBS Chr1 22677949 T-C Hetero INTERGENIC
SBS Chr1 32999650 C-T Homo INTRON
SBS Chr1 41115747 G-T Hetero INTERGENIC
SBS Chr3 14438074 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g188000
SBS Chr3 26876249 A-C Homo INTERGENIC
SBS Chr3 31817903 C-T Hetero INTERGENIC
SBS Chr5 8033192 C-T Hetero INTERGENIC
SBS Chr5 8033194 G-A Hetero INTERGENIC
SBS Chr5 8081705 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g079701
SBS Chr5 8106995 C-T Hetero INTERGENIC
SBS Chr5 26560038 C-T Homo INTERGENIC
SBS Chr6 582347 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g005300
SBS Chr6 1122748 C-G Hetero INTERGENIC
SBS Chr6 15347347 A-G Homo INTERGENIC
SBS Chr6 23952475 T-A Hetero INTERGENIC
SBS Chr6 25514899 G-A Hetero INTERGENIC
SBS Chr6 27675550 G-T Homo INTERGENIC
SBS Chr7 10017039 C-T Hetero INTERGENIC
SBS Chr7 18846143 A-C Hetero INTERGENIC
SBS Chr7 25639225 T-A Homo INTERGENIC
SBS Chr9 15207211 A-G Homo INTERGENIC
SBS Chr10 372378 C-T Homo INTERGENIC
SBS Chr10 9000868 A-G Hetero INTERGENIC
SBS Chr11 2454372 C-G Hetero INTERGENIC
SBS Chr11 14625612 A-C Hetero INTERGENIC
SBS Chr11 14625613 T-A Hetero INTERGENIC
SBS Chr11 21085922 G-A Homo INTERGENIC
SBS Chr12 23791475 C-T Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1628474 1628480 6
Deletion Chr4 2168206 2168207 1
Deletion Chr9 3054001 3073000 18999
Deletion Chr11 5771670 5771671 1
Deletion Chr6 6466606 6466608 2
Deletion Chr2 8108100 8108101 1
Deletion Chr6 12226535 12226546 11
Deletion Chr5 13769117 13769128 11
Deletion Chr3 13956479 13956484 5
Deletion Chr6 14095346 14095355 9
Deletion Chr6 15663605 15663608 3
Deletion Chr3 26817874 26817877 3
Deletion Chr11 27904001 27921000 16999 3
Deletion Chr1 36628067 36628076 9
Deletion Chr1 43103600 43103605 5

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 22823116 22823118 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 2809031 3048590 OsKitaake03g042900
Inversion Chr3 2809032 3048571 OsKitaake03g042900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2701324	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g033800
SBS	Chr1	7237472	T-C	Homo	INTERGENIC
SBS	Chr1	22677949	T-C	Hetero	INTERGENIC
SBS	Chr1	32999650	C-T	Homo	INTRON
SBS	Chr1	41115747	G-T	Hetero	INTERGENIC
SBS	Chr3	14438074	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g188000
SBS	Chr3	26876249	A-C	Homo	INTERGENIC
SBS	Chr3	31817903	C-T	Hetero	INTERGENIC
SBS	Chr5	8033192	C-T	Hetero	INTERGENIC
SBS	Chr5	8033194	G-A	Hetero	INTERGENIC
SBS	Chr5	8081705	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g079701
SBS	Chr5	8106995	C-T	Hetero	INTERGENIC
SBS	Chr5	26560038	C-T	Homo	INTERGENIC
SBS	Chr6	582347	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g005300
SBS	Chr6	1122748	C-G	Hetero	INTERGENIC
SBS	Chr6	15347347	A-G	Homo	INTERGENIC
SBS	Chr6	23952475	T-A	Hetero	INTERGENIC
SBS	Chr6	25514899	G-A	Hetero	INTERGENIC
SBS	Chr6	27675550	G-T	Homo	INTERGENIC
SBS	Chr7	10017039	C-T	Hetero	INTERGENIC
SBS	Chr7	18846143	A-C	Hetero	INTERGENIC
SBS	Chr7	25639225	T-A	Homo	INTERGENIC
SBS	Chr9	15207211	A-G	Homo	INTERGENIC
SBS	Chr10	372378	C-T	Homo	INTERGENIC
SBS	Chr10	9000868	A-G	Hetero	INTERGENIC
SBS	Chr11	2454372	C-G	Hetero	INTERGENIC
SBS	Chr11	14625612	A-C	Hetero	INTERGENIC
SBS	Chr11	14625613	T-A	Hetero	INTERGENIC
SBS	Chr11	21085922	G-A	Homo	INTERGENIC
SBS	Chr12	23791475	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1628474	1628480	6
Deletion	Chr4	2168206	2168207	1
Deletion	Chr9	3054001	3073000	18999
Deletion	Chr11	5771670	5771671	1
Deletion	Chr6	6466606	6466608	2
Deletion	Chr2	8108100	8108101	1
Deletion	Chr6	12226535	12226546	11
Deletion	Chr5	13769117	13769128	11
Deletion	Chr3	13956479	13956484	5
Deletion	Chr6	14095346	14095355	9
Deletion	Chr6	15663605	15663608	3
Deletion	Chr3	26817874	26817877	3
Deletion	Chr11	27904001	27921000	16999	3
Deletion	Chr1	36628067	36628076	9
Deletion	Chr1	43103600	43103605	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	2809031	3048590	OsKitaake03g042900
Inversion	Chr3	2809032	3048571	OsKitaake03g042900

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes