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Mutant Information

Mutant Name	FN1570-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1570-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 20

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9785491 A-G Hetero INTRON
SBS Chr1 38937917 A-C Homo INTRON
SBS Chr3 14592926 A-T Homo INTERGENIC
SBS Chr3 27569502 T-G Homo INTERGENIC
SBS Chr3 37234212 A-T Hetero INTRON
SBS Chr4 24818310 C-T Hetero INTERGENIC
SBS Chr5 13341707 A-G Homo INTRON
SBS Chr5 14093673 A-G Homo INTERGENIC
SBS Chr5 22485928 G-A Hetero INTERGENIC
SBS Chr6 1180437 A-C Hetero UTR_5_PRIME
SBS Chr6 1618790 C-T Hetero INTRON
SBS Chr6 6416630 C-T Hetero SYNONYMOUS_CODING
SBS Chr6 14813547 T-C Hetero INTERGENIC
SBS Chr6 20232300 C-T Homo INTERGENIC
SBS Chr7 19553717 G-A Hetero INTERGENIC
SBS Chr9 14765351 G-A Homo INTERGENIC
SBS Chr9 21196102 A-G Homo INTERGENIC
SBS Chr10 13374790 T-G Homo INTERGENIC
SBS Chr11 13231748 C-G Hetero INTERGENIC
SBS Chr12 21126719 G-A Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 791221 791239 18
Deletion Chr5 4824001 4972000 147999 24
Deletion Chr12 6061138 6061140 2
Deletion Chr4 10335753 10335754 1
Deletion Chr3 10417867 10417881 14
Deletion Chr5 10672997 10673005 8
Deletion Chr5 12515860 12515861 1
Deletion Chr12 12598001 12615000 16999 5
Deletion Chr12 13171001 13201000 29999 8
Deletion Chr8 13490546 13490548 2
Deletion Chr8 14294001 14303000 8999
Deletion Chr8 16546001 16566000 19999 6
Deletion Chr1 17485001 17502000 16999
Deletion Chr6 19735131 19735499 368
Deletion Chr8 28655716 28655721 5

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 37336729 37336734 4
Insertion Chr6 13560555 13560558 2
Insertion Chr8 7323137 7323139 1
Insertion Chr9 14746087 14746089 1
Insertion Chr12 16125353 16125355 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 2298757 2376881
Inversion Chr9 13697967 13912760 OsKitaake09g092100

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 27980753 Chr1 38469854 2
Translocation Chr4 27984151 Chr1 38469854 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9785491	A-G	Hetero	INTRON
SBS	Chr1	38937917	A-C	Homo	INTRON
SBS	Chr3	14592926	A-T	Homo	INTERGENIC
SBS	Chr3	27569502	T-G	Homo	INTERGENIC
SBS	Chr3	37234212	A-T	Hetero	INTRON
SBS	Chr4	24818310	C-T	Hetero	INTERGENIC
SBS	Chr5	13341707	A-G	Homo	INTRON
SBS	Chr5	14093673	A-G	Homo	INTERGENIC
SBS	Chr5	22485928	G-A	Hetero	INTERGENIC
SBS	Chr6	1180437	A-C	Hetero	UTR_5_PRIME
SBS	Chr6	1618790	C-T	Hetero	INTRON
SBS	Chr6	6416630	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	14813547	T-C	Hetero	INTERGENIC
SBS	Chr6	20232300	C-T	Homo	INTERGENIC
SBS	Chr7	19553717	G-A	Hetero	INTERGENIC
SBS	Chr9	14765351	G-A	Homo	INTERGENIC
SBS	Chr9	21196102	A-G	Homo	INTERGENIC
SBS	Chr10	13374790	T-G	Homo	INTERGENIC
SBS	Chr11	13231748	C-G	Hetero	INTERGENIC
SBS	Chr12	21126719	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	791221	791239	18
Deletion	Chr5	4824001	4972000	147999	24
Deletion	Chr12	6061138	6061140	2
Deletion	Chr4	10335753	10335754	1
Deletion	Chr3	10417867	10417881	14
Deletion	Chr5	10672997	10673005	8
Deletion	Chr5	12515860	12515861	1
Deletion	Chr12	12598001	12615000	16999	5
Deletion	Chr12	13171001	13201000	29999	8
Deletion	Chr8	13490546	13490548	2
Deletion	Chr8	14294001	14303000	8999
Deletion	Chr8	16546001	16566000	19999	6
Deletion	Chr1	17485001	17502000	16999
Deletion	Chr6	19735131	19735499	368
Deletion	Chr8	28655716	28655721	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	2298757	2376881
Inversion	Chr9	13697967	13912760	OsKitaake09g092100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes