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Mutant Information

Mutant Name	FN1571-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1571-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1161232 G-T Hetero UTR_3_PRIME
SBS Chr1 1887461 C-T Hetero INTERGENIC
SBS Chr1 14193924 G-C Homo INTERGENIC
SBS Chr1 14750155 A-G Homo INTERGENIC
SBS Chr2 17711171 G-T Hetero INTERGENIC
SBS Chr2 18234360 G-T Hetero INTERGENIC
SBS Chr2 25975402 A-G Hetero INTERGENIC
SBS Chr2 27825502 G-A Homo INTERGENIC
SBS Chr2 31511566 C-T Hetero INTERGENIC
SBS Chr3 1996822 C-T Homo INTERGENIC
SBS Chr3 2372264 T-C Homo INTERGENIC
SBS Chr3 7053534 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g098750
SBS Chr3 10124713 A-G Hetero INTRON
SBS Chr3 10133403 C-T Hetero INTERGENIC
SBS Chr3 14392740 G-A Hetero INTRON
SBS Chr3 18906033 G-A Hetero INTERGENIC
SBS Chr3 28575425 G-A Hetero INTERGENIC
SBS Chr3 28575426 C-A Hetero INTERGENIC
SBS Chr4 2233999 G-A Hetero INTERGENIC
SBS Chr4 11710987 C-T Hetero INTERGENIC
SBS Chr4 21523250 C-A Hetero INTRON
SBS Chr4 21523251 C-T Hetero INTRON
SBS Chr4 21523255 C-T Hetero INTRON
SBS Chr4 31100392 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g242300
SBS Chr5 332414 T-C Hetero INTERGENIC
SBS Chr5 12927364 C-T Homo INTERGENIC
SBS Chr9 3996599 G-C Hetero INTERGENIC
SBS Chr10 11971489 A-G Homo INTERGENIC
SBS Chr10 15883063 T-G Hetero INTERGENIC
SBS Chr10 15883064 A-T Hetero INTERGENIC
SBS Chr10 17432813 C-T Hetero INTRON
SBS Chr10 19142738 C-T Hetero INTERGENIC
SBS Chr12 25992620 A-G Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1753898 1753899 1 OsKitaake11g023800
Deletion Chr1 8447698 8447709 11
Deletion Chr2 8702523 8702526 3
Deletion Chr10 9665203 9665205 2
Deletion Chr12 9728001 9752000 23999
Deletion Chr4 9744805 9744808 3
Deletion Chr7 10586786 10586787 1
Deletion Chr9 14530582 14530584 2
Deletion Chr1 15984896 15984907 11
Deletion Chr5 16002768 16002874 106
Deletion Chr3 16558244 16558245 1
Deletion Chr9 19802830 19802842 12 OsKitaake09g163900
Deletion Chr6 20634712 20634715 3
Deletion Chr4 28528979 28528984 5 OsKitaake04g213300
Deletion Chr8 28812062 28812067 5 OsKitaake08g248100

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 10216098 10216101 2
Insertion Chr11 11259765 11259768 2 OsKitaake11g107900

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 14758122 15246159
Inversion Chr6 14758126 15246179

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1161232	G-T	Hetero	UTR_3_PRIME
SBS	Chr1	1887461	C-T	Hetero	INTERGENIC
SBS	Chr1	14193924	G-C	Homo	INTERGENIC
SBS	Chr1	14750155	A-G	Homo	INTERGENIC
SBS	Chr2	17711171	G-T	Hetero	INTERGENIC
SBS	Chr2	18234360	G-T	Hetero	INTERGENIC
SBS	Chr2	25975402	A-G	Hetero	INTERGENIC
SBS	Chr2	27825502	G-A	Homo	INTERGENIC
SBS	Chr2	31511566	C-T	Hetero	INTERGENIC
SBS	Chr3	1996822	C-T	Homo	INTERGENIC
SBS	Chr3	2372264	T-C	Homo	INTERGENIC
SBS	Chr3	7053534	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g098750
SBS	Chr3	10124713	A-G	Hetero	INTRON
SBS	Chr3	10133403	C-T	Hetero	INTERGENIC
SBS	Chr3	14392740	G-A	Hetero	INTRON
SBS	Chr3	18906033	G-A	Hetero	INTERGENIC
SBS	Chr3	28575425	G-A	Hetero	INTERGENIC
SBS	Chr3	28575426	C-A	Hetero	INTERGENIC
SBS	Chr4	2233999	G-A	Hetero	INTERGENIC
SBS	Chr4	11710987	C-T	Hetero	INTERGENIC
SBS	Chr4	21523250	C-A	Hetero	INTRON
SBS	Chr4	21523251	C-T	Hetero	INTRON
SBS	Chr4	21523255	C-T	Hetero	INTRON
SBS	Chr4	31100392	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g242300
SBS	Chr5	332414	T-C	Hetero	INTERGENIC
SBS	Chr5	12927364	C-T	Homo	INTERGENIC
SBS	Chr9	3996599	G-C	Hetero	INTERGENIC
SBS	Chr10	11971489	A-G	Homo	INTERGENIC
SBS	Chr10	15883063	T-G	Hetero	INTERGENIC
SBS	Chr10	15883064	A-T	Hetero	INTERGENIC
SBS	Chr10	17432813	C-T	Hetero	INTRON
SBS	Chr10	19142738	C-T	Hetero	INTERGENIC
SBS	Chr12	25992620	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1753898	1753899	1	OsKitaake11g023800
Deletion	Chr1	8447698	8447709	11
Deletion	Chr2	8702523	8702526	3
Deletion	Chr10	9665203	9665205	2
Deletion	Chr12	9728001	9752000	23999
Deletion	Chr4	9744805	9744808	3
Deletion	Chr7	10586786	10586787	1
Deletion	Chr9	14530582	14530584	2
Deletion	Chr1	15984896	15984907	11
Deletion	Chr5	16002768	16002874	106
Deletion	Chr3	16558244	16558245	1
Deletion	Chr9	19802830	19802842	12	OsKitaake09g163900
Deletion	Chr6	20634712	20634715	3
Deletion	Chr4	28528979	28528984	5	OsKitaake04g213300
Deletion	Chr8	28812062	28812067	5	OsKitaake08g248100

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	14758122	15246159
Inversion	Chr6	14758126	15246179

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes