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Mutant Information

Mutant Name	FN1572-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1572-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17680529 C-G Hetero INTRON
SBS Chr1 22562357 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g215800
SBS Chr1 24525384 C-T Hetero INTERGENIC
SBS Chr1 34912668 G-A Hetero INTERGENIC
SBS Chr1 39256381 C-T Hetero INTERGENIC
SBS Chr1 44071556 G-T Hetero INTRON
SBS Chr2 3830056 C-G Hetero INTERGENIC
SBS Chr2 8465427 C-T Homo NON_SYNONYMOUS_CODING OsKitaake02g107300
SBS Chr2 8484297 G-A Homo STOP_GAINED OsKitaake02g107600
SBS Chr2 20924829 C-T Hetero INTERGENIC
SBS Chr2 21861499 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g212500
SBS Chr2 24334719 G-A Homo INTERGENIC
SBS Chr3 2792634 A-G Hetero INTERGENIC
SBS Chr3 14959588 G-A Hetero INTRON
SBS Chr3 14959590 G-A Hetero INTRON
SBS Chr3 25911314 A-T Homo INTERGENIC
SBS Chr4 2316058 G-C Hetero INTERGENIC
SBS Chr4 11321666 G-A Hetero INTERGENIC
SBS Chr4 14876911 A-T Hetero INTERGENIC
SBS Chr4 24592708 G-A Hetero INTERGENIC
SBS Chr5 640538 A-T Homo INTERGENIC
SBS Chr5 1089581 T-G Homo INTRON
SBS Chr5 4867966 G-T Hetero INTRON
SBS Chr5 29943345 C-T Hetero INTERGENIC
SBS Chr7 5575600 T-G Hetero INTERGENIC
SBS Chr7 23291303 A-T Hetero INTRON
SBS Chr8 1420228 C-A Hetero INTERGENIC
SBS Chr8 7392145 C-T Homo INTERGENIC
SBS Chr8 9793537 G-A Homo INTERGENIC
SBS Chr8 16977432 A-C Homo INTERGENIC
SBS Chr9 14440206 T-C Homo INTERGENIC
SBS Chr9 17964517 C-T Hetero INTRON
SBS Chr10 971572 C-T Hetero INTERGENIC
SBS Chr10 9470041 C-A Hetero INTERGENIC
SBS Chr10 15824899 A-C Homo INTERGENIC
SBS Chr11 236216 C-T Homo INTERGENIC
SBS Chr11 7840902 C-G Homo UTR_3_PRIME
SBS Chr11 8478536 T-A Homo INTRON
SBS Chr11 10699034 G-A Homo INTERGENIC
SBS Chr11 23627877 C-T Hetero INTERGENIC
SBS Chr12 13700564 G-C Homo NON_SYNONYMOUS_CODING OsKitaake12g112900
SBS Chr12 14999035 G-A Homo INTERGENIC
SBS Chr12 25440111 C-T Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 349852 349853 1
Deletion Chr11 993523 993524 1
Deletion Chr11 3941940 3941941 1
Deletion Chr10 4152401 4152405 4
Deletion Chr10 8914408 8914428 20
Deletion Chr2 10425520 10425529 9
Deletion Chr12 12596001 12615000 18999 5
Deletion Chr8 15157146 15157147 1
Deletion Chr8 15187735 15187737 2
Deletion Chr11 15644989 15644991 2
Deletion Chr3 16136815 16136819 4
Deletion Chr5 18313001 18356000 42999 5
Deletion Chr3 19830488 19830494 6
Deletion Chr6 22150013 22150033 20
Deletion Chr5 23352728 23353144 416
Deletion Chr1 24891218 24891237 19
Deletion Chr6 25954765 25954767 2
Deletion Chr3 27744834 27744836 2
Deletion Chr2 32252011 32252013 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 34336476 34336479 2
Insertion Chr9 14440221 14440223 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 27761659 28002596
Inversion Chr3 27761672 28002601

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17680529	C-G	Hetero	INTRON
SBS	Chr1	22562357	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g215800
SBS	Chr1	24525384	C-T	Hetero	INTERGENIC
SBS	Chr1	34912668	G-A	Hetero	INTERGENIC
SBS	Chr1	39256381	C-T	Hetero	INTERGENIC
SBS	Chr1	44071556	G-T	Hetero	INTRON
SBS	Chr2	3830056	C-G	Hetero	INTERGENIC
SBS	Chr2	8465427	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g107300
SBS	Chr2	8484297	G-A	Homo	STOP_GAINED	OsKitaake02g107600
SBS	Chr2	20924829	C-T	Hetero	INTERGENIC
SBS	Chr2	21861499	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g212500
SBS	Chr2	24334719	G-A	Homo	INTERGENIC
SBS	Chr3	2792634	A-G	Hetero	INTERGENIC
SBS	Chr3	14959588	G-A	Hetero	INTRON
SBS	Chr3	14959590	G-A	Hetero	INTRON
SBS	Chr3	25911314	A-T	Homo	INTERGENIC
SBS	Chr4	2316058	G-C	Hetero	INTERGENIC
SBS	Chr4	11321666	G-A	Hetero	INTERGENIC
SBS	Chr4	14876911	A-T	Hetero	INTERGENIC
SBS	Chr4	24592708	G-A	Hetero	INTERGENIC
SBS	Chr5	640538	A-T	Homo	INTERGENIC
SBS	Chr5	1089581	T-G	Homo	INTRON
SBS	Chr5	4867966	G-T	Hetero	INTRON
SBS	Chr5	29943345	C-T	Hetero	INTERGENIC
SBS	Chr7	5575600	T-G	Hetero	INTERGENIC
SBS	Chr7	23291303	A-T	Hetero	INTRON
SBS	Chr8	1420228	C-A	Hetero	INTERGENIC
SBS	Chr8	7392145	C-T	Homo	INTERGENIC
SBS	Chr8	9793537	G-A	Homo	INTERGENIC
SBS	Chr8	16977432	A-C	Homo	INTERGENIC
SBS	Chr9	14440206	T-C	Homo	INTERGENIC
SBS	Chr9	17964517	C-T	Hetero	INTRON
SBS	Chr10	971572	C-T	Hetero	INTERGENIC
SBS	Chr10	9470041	C-A	Hetero	INTERGENIC
SBS	Chr10	15824899	A-C	Homo	INTERGENIC
SBS	Chr11	236216	C-T	Homo	INTERGENIC
SBS	Chr11	7840902	C-G	Homo	UTR_3_PRIME
SBS	Chr11	8478536	T-A	Homo	INTRON
SBS	Chr11	10699034	G-A	Homo	INTERGENIC
SBS	Chr11	23627877	C-T	Hetero	INTERGENIC
SBS	Chr12	13700564	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g112900
SBS	Chr12	14999035	G-A	Homo	INTERGENIC
SBS	Chr12	25440111	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	349852	349853	1
Deletion	Chr11	993523	993524	1
Deletion	Chr11	3941940	3941941	1
Deletion	Chr10	4152401	4152405	4
Deletion	Chr10	8914408	8914428	20
Deletion	Chr2	10425520	10425529	9
Deletion	Chr12	12596001	12615000	18999	5
Deletion	Chr8	15157146	15157147	1
Deletion	Chr8	15187735	15187737	2
Deletion	Chr11	15644989	15644991	2
Deletion	Chr3	16136815	16136819	4
Deletion	Chr5	18313001	18356000	42999	5
Deletion	Chr3	19830488	19830494	6
Deletion	Chr6	22150013	22150033	20
Deletion	Chr5	23352728	23353144	416
Deletion	Chr1	24891218	24891237	19
Deletion	Chr6	25954765	25954767	2
Deletion	Chr3	27744834	27744836	2
Deletion	Chr2	32252011	32252013	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	27761659	28002596
Inversion	Chr3	27761672	28002601

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes