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Mutant Information

Mutant Name	FN1575-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1575-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11158425 C-T Hetero INTERGENIC
SBS Chr1 18818082 C-G Hetero INTERGENIC
SBS Chr1 39389798 C-T Homo INTERGENIC
SBS Chr2 28001544 G-A Homo INTERGENIC
SBS Chr2 30570559 G-A Hetero STOP_GAINED OsKitaake02g312200
SBS Chr2 33420771 G-A Homo INTERGENIC
SBS Chr4 1666616 G-A Hetero INTERGENIC
SBS Chr4 4164322 C-T Homo INTERGENIC
SBS Chr4 13052201 G-C Homo INTERGENIC
SBS Chr4 21203048 G-A Hetero INTERGENIC
SBS Chr4 23529149 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 34022026 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g284000
SBS Chr5 25789523 C-G Hetero INTERGENIC
SBS Chr6 2659183 T-A Hetero INTERGENIC
SBS Chr7 112894 C-T Hetero INTERGENIC
SBS Chr7 4781690 C-T Hetero INTERGENIC
SBS Chr7 25151059 T-G Hetero INTERGENIC
SBS Chr8 7133555 G-C Hetero INTERGENIC
SBS Chr8 16483782 G-A Hetero INTERGENIC
SBS Chr9 11733111 C-A Hetero INTERGENIC
SBS Chr9 15846656 G-A Hetero UTR_5_PRIME
SBS Chr9 16938195 A-G Hetero INTERGENIC
SBS Chr11 9732905 C-A Homo SYNONYMOUS_CODING
SBS Chr11 25877753 G-T Homo INTERGENIC
SBS Chr11 25877754 C-T Homo INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1542266 1542267 1
Deletion Chr4 1774310 1774323 13
Deletion Chr5 2323299 2323305 6
Deletion Chr11 2733399 2733400 1
Deletion Chr7 5089051 5089052 1
Deletion Chr1 8848784 8848785 1 OsKitaake01g110300
Deletion Chr6 16472320 16472322 2
Deletion Chr4 19327531 19327533 2
Deletion Chr10 23200010 23200012 2
Deletion Chr6 24785963 24785966 3
Deletion Chr1 28201856 28201866 10

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 9711938 9711942 3
Insertion Chr12 19053516 19053519 2
Insertion Chr6 20641324 20641326 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 18718001 18732402 OsKitaake01g188100
Inversion Chr10 22026422 22887661 OsKitaake10g191100
Inversion Chr10 22026530 22887715 OsKitaake10g191100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11158425	C-T	Hetero	INTERGENIC
SBS	Chr1	18818082	C-G	Hetero	INTERGENIC
SBS	Chr1	39389798	C-T	Homo	INTERGENIC
SBS	Chr2	28001544	G-A	Homo	INTERGENIC
SBS	Chr2	30570559	G-A	Hetero	STOP_GAINED	OsKitaake02g312200
SBS	Chr2	33420771	G-A	Homo	INTERGENIC
SBS	Chr4	1666616	G-A	Hetero	INTERGENIC
SBS	Chr4	4164322	C-T	Homo	INTERGENIC
SBS	Chr4	13052201	G-C	Homo	INTERGENIC
SBS	Chr4	21203048	G-A	Hetero	INTERGENIC
SBS	Chr4	23529149	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	34022026	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g284000
SBS	Chr5	25789523	C-G	Hetero	INTERGENIC
SBS	Chr6	2659183	T-A	Hetero	INTERGENIC
SBS	Chr7	112894	C-T	Hetero	INTERGENIC
SBS	Chr7	4781690	C-T	Hetero	INTERGENIC
SBS	Chr7	25151059	T-G	Hetero	INTERGENIC
SBS	Chr8	7133555	G-C	Hetero	INTERGENIC
SBS	Chr8	16483782	G-A	Hetero	INTERGENIC
SBS	Chr9	11733111	C-A	Hetero	INTERGENIC
SBS	Chr9	15846656	G-A	Hetero	UTR_5_PRIME
SBS	Chr9	16938195	A-G	Hetero	INTERGENIC
SBS	Chr11	9732905	C-A	Homo	SYNONYMOUS_CODING
SBS	Chr11	25877753	G-T	Homo	INTERGENIC
SBS	Chr11	25877754	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1542266	1542267	1
Deletion	Chr4	1774310	1774323	13
Deletion	Chr5	2323299	2323305	6
Deletion	Chr11	2733399	2733400	1
Deletion	Chr7	5089051	5089052	1
Deletion	Chr1	8848784	8848785	1	OsKitaake01g110300
Deletion	Chr6	16472320	16472322	2
Deletion	Chr4	19327531	19327533	2
Deletion	Chr10	23200010	23200012	2
Deletion	Chr6	24785963	24785966	3
Deletion	Chr1	28201856	28201866	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	18718001	18732402	OsKitaake01g188100
Inversion	Chr10	22026422	22887661	OsKitaake10g191100
Inversion	Chr10	22026530	22887715	OsKitaake10g191100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes