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Mutant Information

Mutant Name	FN1576-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1576-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 10455652 C-T Hetero SYNONYMOUS_CODING
SBS Chr2 24880908 G-A Hetero INTERGENIC
SBS Chr2 34183619 C-A Hetero SPLICE_SITE_REGION
SBS Chr3 1839802 A-C Homo INTERGENIC
SBS Chr3 21975291 A-G Hetero INTERGENIC
SBS Chr4 10436272 G-T Hetero INTERGENIC
SBS Chr4 30255465 T-G Hetero INTERGENIC
SBS Chr4 30484889 G-T Homo INTRON
SBS Chr4 34762848 C-T Hetero INTERGENIC
SBS Chr6 15136596 C-T Homo INTERGENIC
SBS Chr6 16035550 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g154200
SBS Chr6 17684702 T-C Hetero INTERGENIC
SBS Chr6 18833767 G-A Hetero INTERGENIC
SBS Chr6 23877659 G-A Hetero INTRON
SBS Chr6 27937737 T-G Homo INTRON
SBS Chr7 17341288 C-T Hetero INTRON
SBS Chr8 7098637 C-G Homo INTERGENIC
SBS Chr8 8538332 C-T Hetero INTERGENIC
SBS Chr8 8538337 C-T Hetero INTERGENIC
SBS Chr9 18206519 C-T Hetero UTR_5_PRIME
SBS Chr9 18208711 A-G Hetero INTRON
SBS Chr9 18208712 C-A Hetero INTRON
SBS Chr10 22166094 A-G Hetero INTERGENIC
SBS Chr11 11817673 T-C Hetero INTERGENIC
SBS Chr11 14197194 A-G Hetero UTR_3_PRIME
SBS Chr11 14590243 T-A Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 88291 88645 354
Deletion Chr1 598580 598581 1 OsKitaake01g114300
Deletion Chr10 1035669 1035681 12
Deletion Chr8 2255403 2255409 6
Deletion Chr12 4709902 4709905 3
Deletion Chr2 10197872 10197878 6
Deletion Chr7 13828055 13828059 4
Deletion Chr12 16137212 16137215 3
Deletion Chr6 17027241 17027245 4
Deletion Chr2 17086064 17086066 2
Deletion Chr7 17341185 17341196 11
Deletion Chr3 17890999 17891000 1
Deletion Chr5 23352728 23353144 416
Deletion Chr7 25362513 25362518 5
Deletion Chr6 26446574 26446576 2
Deletion Chr4 29339237 29339240 3
Deletion Chr4 31838469 31838470 1
Deletion Chr1 32993793 32993794 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 17304795 17304798 2
Insertion Chr8 2708292 2708294 1
Insertion Chr8 13474384 13474391 6

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 744940 1356575
Inversion Chr10 744947 1356582
Inversion Chr3 11771516 11880830 OsKitaake03g161800
Inversion Chr3 11771520 11880829 OsKitaake03g161800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	10455652	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	24880908	G-A	Hetero	INTERGENIC
SBS	Chr2	34183619	C-A	Hetero	SPLICE_SITE_REGION
SBS	Chr3	1839802	A-C	Homo	INTERGENIC
SBS	Chr3	21975291	A-G	Hetero	INTERGENIC
SBS	Chr4	10436272	G-T	Hetero	INTERGENIC
SBS	Chr4	30255465	T-G	Hetero	INTERGENIC
SBS	Chr4	30484889	G-T	Homo	INTRON
SBS	Chr4	34762848	C-T	Hetero	INTERGENIC
SBS	Chr6	15136596	C-T	Homo	INTERGENIC
SBS	Chr6	16035550	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g154200
SBS	Chr6	17684702	T-C	Hetero	INTERGENIC
SBS	Chr6	18833767	G-A	Hetero	INTERGENIC
SBS	Chr6	23877659	G-A	Hetero	INTRON
SBS	Chr6	27937737	T-G	Homo	INTRON
SBS	Chr7	17341288	C-T	Hetero	INTRON
SBS	Chr8	7098637	C-G	Homo	INTERGENIC
SBS	Chr8	8538332	C-T	Hetero	INTERGENIC
SBS	Chr8	8538337	C-T	Hetero	INTERGENIC
SBS	Chr9	18206519	C-T	Hetero	UTR_5_PRIME
SBS	Chr9	18208711	A-G	Hetero	INTRON
SBS	Chr9	18208712	C-A	Hetero	INTRON
SBS	Chr10	22166094	A-G	Hetero	INTERGENIC
SBS	Chr11	11817673	T-C	Hetero	INTERGENIC
SBS	Chr11	14197194	A-G	Hetero	UTR_3_PRIME
SBS	Chr11	14590243	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	88291	88645	354
Deletion	Chr1	598580	598581	1	OsKitaake01g114300
Deletion	Chr10	1035669	1035681	12
Deletion	Chr8	2255403	2255409	6
Deletion	Chr12	4709902	4709905	3
Deletion	Chr2	10197872	10197878	6
Deletion	Chr7	13828055	13828059	4
Deletion	Chr12	16137212	16137215	3
Deletion	Chr6	17027241	17027245	4
Deletion	Chr2	17086064	17086066	2
Deletion	Chr7	17341185	17341196	11
Deletion	Chr3	17890999	17891000	1
Deletion	Chr5	23352728	23353144	416
Deletion	Chr7	25362513	25362518	5
Deletion	Chr6	26446574	26446576	2
Deletion	Chr4	29339237	29339240	3
Deletion	Chr4	31838469	31838470	1
Deletion	Chr1	32993793	32993794	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	744940	1356575
Inversion	Chr10	744947	1356582
Inversion	Chr3	11771516	11880830	OsKitaake03g161800
Inversion	Chr3	11771520	11880829	OsKitaake03g161800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes