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Mutant Information

Mutant Name	FN1582-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1582-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2947113 C-T Hetero INTERGENIC
SBS Chr1 35561652 C-A Homo UTR_3_PRIME
SBS Chr1 42963099 T-C Homo INTRON
SBS Chr1 42985980 G-A Homo INTERGENIC
SBS Chr2 23410437 C-A Hetero INTRON
SBS Chr3 3286930 A-T Hetero INTERGENIC
SBS Chr3 18467448 C-A Hetero INTERGENIC
SBS Chr3 21105551 T-C Hetero INTERGENIC
SBS Chr3 26527977 C-T Homo INTERGENIC
SBS Chr4 14566065 C-T Hetero INTERGENIC
SBS Chr4 19234472 C-T Homo INTERGENIC
SBS Chr4 19234478 T-C Homo INTERGENIC
SBS Chr4 25261700 G-A Homo INTERGENIC
SBS Chr4 29887654 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g229600
SBS Chr4 32554341 A-T Hetero INTRON
SBS Chr5 3215863 C-A Hetero INTERGENIC
SBS Chr5 14723657 A-G Hetero INTERGENIC
SBS Chr5 16923517 A-T Homo INTERGENIC
SBS Chr6 2585750 T-A Homo INTERGENIC
SBS Chr6 2973760 G-C Hetero INTERGENIC
SBS Chr6 4185770 G-A Hetero UTR_3_PRIME
SBS Chr6 10486825 C-T Hetero INTERGENIC
SBS Chr6 20081637 G-T Hetero STOP_GAINED OsKitaake06g180200
SBS Chr7 15257834 G-T Homo INTERGENIC
SBS Chr7 23743476 G-A Hetero INTERGENIC
SBS Chr8 2423133 G-A Hetero INTERGENIC
SBS Chr8 4020945 G-A Hetero INTERGENIC
SBS Chr8 18828240 C-T Hetero UTR_3_PRIME
SBS Chr9 10282406 C-A Homo INTRON
SBS Chr9 13229865 C-T Hetero SYNONYMOUS_CODING
SBS Chr10 12235487 C-T Hetero INTERGENIC
SBS Chr10 16179522 A-G Hetero INTERGENIC
SBS Chr10 16301429 C-T Hetero INTRON
SBS Chr10 16783834 A-C Hetero INTRON
SBS Chr10 17847903 C-T Hetero INTERGENIC
SBS Chr11 6557785 A-G Hetero INTERGENIC
SBS Chr11 7751996 G-A Hetero INTERGENIC
SBS Chr11 9994559 G-A Hetero INTERGENIC
SBS Chr11 10097356 C-T Hetero UTR_3_PRIME
SBS Chr11 10097357 C-T Hetero UTR_3_PRIME
SBS Chr12 5893625 C-A Hetero INTERGENIC
SBS Chr12 19675327 C-T Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 861001 879000 17999 10
Deletion Chr5 3189537 3189538 1
Deletion Chr7 6608187 6608189 2
Deletion Chr7 12233467 12233469 2
Deletion Chr9 12285234 12285235 1
Deletion Chr11 13934001 13934003 2
Deletion Chr10 22203948 22203950 2
Deletion Chr12 23512858 23512861 3
Deletion Chr12 23688205 23688206 1
Deletion Chr4 24769459 24769462 3
Deletion Chr1 25383448 25383452 4
Deletion Chr3 30713596 30713609 13
Deletion Chr4 35085378 35085379 1
Deletion Chr1 35558551 35558565 14
Deletion Chr1 40028568 40028569 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 35891325 35891330 4
Insertion Chr10 13525053 13525056 2
Insertion Chr8 7462609 7462611 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 280396 594351 OsKitaake05g003800
Inversion Chr5 280404 594359 OsKitaake05g003800
Inversion Chr5 2436410 2455152 OsKitaake05g027700
Inversion Chr12 19475486 19692495 OsKitaake12g146000
Inversion Chr12 19476103 19692506 OsKitaake12g146000

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 4721257 Chr6 19726907
Translocation Chr8 4721274 Chr6 19726663
Translocation Chr12 19475497 Chr6 19608804 OsKitaake12g146000
Translocation Chr12 19476077 Chr6 19726657 OsKitaake12g146000
Translocation Chr6 19608810 Chr2 24876062
Translocation Chr6 19726913 Chr2 24876215
Translocation Chr9 20623472 Chr2 25289044

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2947113	C-T	Hetero	INTERGENIC
SBS	Chr1	35561652	C-A	Homo	UTR_3_PRIME
SBS	Chr1	42963099	T-C	Homo	INTRON
SBS	Chr1	42985980	G-A	Homo	INTERGENIC
SBS	Chr2	23410437	C-A	Hetero	INTRON
SBS	Chr3	3286930	A-T	Hetero	INTERGENIC
SBS	Chr3	18467448	C-A	Hetero	INTERGENIC
SBS	Chr3	21105551	T-C	Hetero	INTERGENIC
SBS	Chr3	26527977	C-T	Homo	INTERGENIC
SBS	Chr4	14566065	C-T	Hetero	INTERGENIC
SBS	Chr4	19234472	C-T	Homo	INTERGENIC
SBS	Chr4	19234478	T-C	Homo	INTERGENIC
SBS	Chr4	25261700	G-A	Homo	INTERGENIC
SBS	Chr4	29887654	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g229600
SBS	Chr4	32554341	A-T	Hetero	INTRON
SBS	Chr5	3215863	C-A	Hetero	INTERGENIC
SBS	Chr5	14723657	A-G	Hetero	INTERGENIC
SBS	Chr5	16923517	A-T	Homo	INTERGENIC
SBS	Chr6	2585750	T-A	Homo	INTERGENIC
SBS	Chr6	2973760	G-C	Hetero	INTERGENIC
SBS	Chr6	4185770	G-A	Hetero	UTR_3_PRIME
SBS	Chr6	10486825	C-T	Hetero	INTERGENIC
SBS	Chr6	20081637	G-T	Hetero	STOP_GAINED	OsKitaake06g180200
SBS	Chr7	15257834	G-T	Homo	INTERGENIC
SBS	Chr7	23743476	G-A	Hetero	INTERGENIC
SBS	Chr8	2423133	G-A	Hetero	INTERGENIC
SBS	Chr8	4020945	G-A	Hetero	INTERGENIC
SBS	Chr8	18828240	C-T	Hetero	UTR_3_PRIME
SBS	Chr9	10282406	C-A	Homo	INTRON
SBS	Chr9	13229865	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr10	12235487	C-T	Hetero	INTERGENIC
SBS	Chr10	16179522	A-G	Hetero	INTERGENIC
SBS	Chr10	16301429	C-T	Hetero	INTRON
SBS	Chr10	16783834	A-C	Hetero	INTRON
SBS	Chr10	17847903	C-T	Hetero	INTERGENIC
SBS	Chr11	6557785	A-G	Hetero	INTERGENIC
SBS	Chr11	7751996	G-A	Hetero	INTERGENIC
SBS	Chr11	9994559	G-A	Hetero	INTERGENIC
SBS	Chr11	10097356	C-T	Hetero	UTR_3_PRIME
SBS	Chr11	10097357	C-T	Hetero	UTR_3_PRIME
SBS	Chr12	5893625	C-A	Hetero	INTERGENIC
SBS	Chr12	19675327	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	861001	879000	17999	10
Deletion	Chr5	3189537	3189538	1
Deletion	Chr7	6608187	6608189	2
Deletion	Chr7	12233467	12233469	2
Deletion	Chr9	12285234	12285235	1
Deletion	Chr11	13934001	13934003	2
Deletion	Chr10	22203948	22203950	2
Deletion	Chr12	23512858	23512861	3
Deletion	Chr12	23688205	23688206	1
Deletion	Chr4	24769459	24769462	3
Deletion	Chr1	25383448	25383452	4
Deletion	Chr3	30713596	30713609	13
Deletion	Chr4	35085378	35085379	1
Deletion	Chr1	35558551	35558565	14
Deletion	Chr1	40028568	40028569	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	280396	594351	OsKitaake05g003800
Inversion	Chr5	280404	594359	OsKitaake05g003800
Inversion	Chr5	2436410	2455152	OsKitaake05g027700
Inversion	Chr12	19475486	19692495	OsKitaake12g146000
Inversion	Chr12	19476103	19692506	OsKitaake12g146000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes