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Mutant Information

Mutant Name	FN1583-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1583-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11251049 T-C Hetero INTERGENIC
SBS Chr1 24025308 C-T Hetero INTERGENIC
SBS Chr1 34761087 C-A Hetero INTERGENIC
SBS Chr2 18383762 C-A Homo INTERGENIC
SBS Chr2 19229936 G-T Homo INTERGENIC
SBS Chr2 19229937 C-T Homo INTERGENIC
SBS Chr3 13385767 C-T Hetero INTERGENIC
SBS Chr3 14854991 C-T Hetero INTERGENIC
SBS Chr3 18568555 T-G Hetero INTRON
SBS Chr3 19697084 T-C Hetero INTERGENIC
SBS Chr4 24873733 T-C Hetero INTERGENIC
SBS Chr5 11795334 T-A Homo INTERGENIC
SBS Chr6 7731192 C-T Hetero SYNONYMOUS_CODING
SBS Chr6 10638194 T-C Hetero INTRON
SBS Chr7 1838713 C-T Homo INTRON
SBS Chr7 7937836 C-A Hetero STOP_GAINED OsKitaake07g087300
SBS Chr8 19006665 G-C Homo INTERGENIC
SBS Chr8 27991689 T-A Hetero INTERGENIC
SBS Chr9 2062025 T-A Hetero INTERGENIC
SBS Chr9 2062026 G-A Hetero INTERGENIC
SBS Chr10 164367 A-G Hetero INTERGENIC
SBS Chr10 1018254 G-A Hetero INTRON
SBS Chr10 2927509 A-T Hetero INTERGENIC
SBS Chr10 9968485 T-C Homo INTERGENIC
SBS Chr12 15863386 G-A Homo INTERGENIC
SBS Chr12 23699539 G-A Homo INTERGENIC
SBS Chr12 25426478 A-G Homo INTERGENIC
SBS Chr12 25426480 C-T Homo INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 900212 900224 12
Deletion Chr4 985509 985510 1
Deletion Chr9 2172001 2195000 22999 OsKitaake09g011300
Deletion Chr11 2438001 2456000 17999 4
Deletion Chr6 3194592 3194594 2
Deletion Chr9 9694573 9694575 2 OsKitaake09g058900
Deletion Chr11 11165001 11185000 19999
Deletion Chr12 12552001 12623000 70999 7
Deletion Chr4 14893001 14910000 16999
Deletion Chr7 16773817 16773908 91
Deletion Chr12 18038061 18038064 3
Deletion Chr2 22074356 22074360 4
Deletion Chr9 22234001 22319000 84999 13
Deletion Chr3 23955945 23955948 3
Deletion Chr6 24981435 24981436 1
Deletion Chr11 25470001 25488000 17999 OsKitaake11g205300
Deletion Chr3 34189001 34212000 22999 4
Deletion Chr3 36425683 36425685 2 OsKitaake03g404400
Deletion Chr1 38409237 38409240 3
Deletion Chr1 39036452 39036456 4

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 128122 128125 2
Insertion Chr8 2708292 2708294 1

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 5048385 Chr1 16005489
Translocation Chr9 6302790 Chr4 2760182
Translocation Chr10 20965054 Chr7 18484944
Translocation Chr10 20965758 Chr7 18484944

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11251049	T-C	Hetero	INTERGENIC
SBS	Chr1	24025308	C-T	Hetero	INTERGENIC
SBS	Chr1	34761087	C-A	Hetero	INTERGENIC
SBS	Chr2	18383762	C-A	Homo	INTERGENIC
SBS	Chr2	19229936	G-T	Homo	INTERGENIC
SBS	Chr2	19229937	C-T	Homo	INTERGENIC
SBS	Chr3	13385767	C-T	Hetero	INTERGENIC
SBS	Chr3	14854991	C-T	Hetero	INTERGENIC
SBS	Chr3	18568555	T-G	Hetero	INTRON
SBS	Chr3	19697084	T-C	Hetero	INTERGENIC
SBS	Chr4	24873733	T-C	Hetero	INTERGENIC
SBS	Chr5	11795334	T-A	Homo	INTERGENIC
SBS	Chr6	7731192	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	10638194	T-C	Hetero	INTRON
SBS	Chr7	1838713	C-T	Homo	INTRON
SBS	Chr7	7937836	C-A	Hetero	STOP_GAINED	OsKitaake07g087300
SBS	Chr8	19006665	G-C	Homo	INTERGENIC
SBS	Chr8	27991689	T-A	Hetero	INTERGENIC
SBS	Chr9	2062025	T-A	Hetero	INTERGENIC
SBS	Chr9	2062026	G-A	Hetero	INTERGENIC
SBS	Chr10	164367	A-G	Hetero	INTERGENIC
SBS	Chr10	1018254	G-A	Hetero	INTRON
SBS	Chr10	2927509	A-T	Hetero	INTERGENIC
SBS	Chr10	9968485	T-C	Homo	INTERGENIC
SBS	Chr12	15863386	G-A	Homo	INTERGENIC
SBS	Chr12	23699539	G-A	Homo	INTERGENIC
SBS	Chr12	25426478	A-G	Homo	INTERGENIC
SBS	Chr12	25426480	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	900212	900224	12
Deletion	Chr4	985509	985510	1
Deletion	Chr9	2172001	2195000	22999	OsKitaake09g011300
Deletion	Chr11	2438001	2456000	17999	4
Deletion	Chr6	3194592	3194594	2
Deletion	Chr9	9694573	9694575	2	OsKitaake09g058900
Deletion	Chr11	11165001	11185000	19999
Deletion	Chr12	12552001	12623000	70999	7
Deletion	Chr4	14893001	14910000	16999
Deletion	Chr7	16773817	16773908	91
Deletion	Chr12	18038061	18038064	3
Deletion	Chr2	22074356	22074360	4
Deletion	Chr9	22234001	22319000	84999	13
Deletion	Chr3	23955945	23955948	3
Deletion	Chr6	24981435	24981436	1
Deletion	Chr11	25470001	25488000	17999	OsKitaake11g205300
Deletion	Chr3	34189001	34212000	22999	4
Deletion	Chr3	36425683	36425685	2	OsKitaake03g404400
Deletion	Chr1	38409237	38409240	3
Deletion	Chr1	39036452	39036456	4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	5048385	Chr1	16005489
Translocation	Chr9	6302790	Chr4	2760182
Translocation	Chr10	20965054	Chr7	18484944
Translocation	Chr10	20965758	Chr7	18484944

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes