Search Kitaake

Mutant Information

Mutant Name	FN1585-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1585-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14961613 G-T Hetero INTERGENIC
SBS Chr1 14961615 A-G Hetero INTERGENIC
SBS Chr1 40004776 G-A Homo INTERGENIC
SBS Chr1 42734340 C-T Hetero INTERGENIC
SBS Chr2 21225240 G-T Homo INTERGENIC
SBS Chr2 25432896 C-T Homo INTERGENIC
SBS Chr2 27228722 G-A Homo NON_SYNONYMOUS_CODING OsKitaake02g273600
SBS Chr3 20522902 C-T Homo INTERGENIC
SBS Chr3 27080709 G-T Hetero INTERGENIC
SBS Chr3 29785471 T-C Hetero INTERGENIC
SBS Chr3 33773992 C-G Hetero INTERGENIC
SBS Chr4 3666477 G-A Hetero INTERGENIC
SBS Chr4 7310604 A-T Hetero INTERGENIC
SBS Chr4 16770868 C-T Hetero INTERGENIC
SBS Chr5 12300266 C-A Hetero INTERGENIC
SBS Chr5 13608183 T-C Hetero INTERGENIC
SBS Chr5 22218537 C-A Homo INTERGENIC
SBS Chr6 9244163 T-A Hetero INTERGENIC
SBS Chr6 9371968 T-G Hetero INTERGENIC
SBS Chr6 11747737 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g128100
SBS Chr6 14272314 G-C Hetero INTERGENIC
SBS Chr6 18080575 G-T Hetero INTERGENIC
SBS Chr6 29868746 T-C Homo SYNONYMOUS_CODING
SBS Chr7 29126138 C-A Hetero INTERGENIC
SBS Chr8 18374295 G-A Homo INTERGENIC
SBS Chr8 26206484 C-T Hetero INTERGENIC
SBS Chr8 26206485 C-T Hetero INTERGENIC
SBS Chr8 27444400 A-C Hetero INTERGENIC
SBS Chr9 3552978 A-G Hetero INTERGENIC
SBS Chr9 13911795 C-T Hetero INTERGENIC
SBS Chr9 17862977 G-A Hetero INTRON
SBS Chr9 21916034 C-T Hetero SYNONYMOUS_CODING
SBS Chr9 22217596 A-T Hetero INTRON
SBS Chr9 22376041 C-T Hetero INTERGENIC
SBS Chr10 8615629 A-C Homo INTERGENIC
SBS Chr10 20308670 T-C Homo INTERGENIC
SBS Chr11 7903547 T-A Homo INTRON
SBS Chr11 7903549 C-A Homo INTRON
SBS Chr11 10728231 C-A Homo INTERGENIC
SBS Chr11 11167776 C-T Homo INTERGENIC
SBS Chr11 29449177 G-A Hetero INTERGENIC
SBS Chr12 19766099 C-T Hetero INTERGENIC
SBS Chr12 26991994 C-T Hetero INTERGENIC
SBS Chr12 26991995 C-G Hetero INTERGENIC
SBS Chr12 26991996 C-T Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 4112994 4112999 5
Deletion Chr10 7452001 7476000 23999
Deletion Chr11 8406365 8406366 1
Deletion Chr9 10677084 10677086 2
Deletion Chr8 10683908 10683912 4
Deletion Chr9 10836001 10866000 29999 2
Deletion Chr3 11534159 11534160 1
Deletion Chr8 18061825 18061828 3
Deletion Chr8 19939106 19939107 1
Deletion Chr6 21836961 21836962 1
Deletion Chr4 25318834 25318837 3 OsKitaake04g172200

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 36589629 36589632 2
Insertion Chr8 469848 469851 2
Insertion Chr12 25366617 25366620 2
Insertion Chr12 16857059 16857061 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 128319 617610 2
Inversion Chr4 128325 617613 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 2092523 Chr6 18409265 OsKitaake06g168400
Translocation Chr11 2095323 Chr6 18409268 OsKitaake06g168400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14961613	G-T	Hetero	INTERGENIC
SBS	Chr1	14961615	A-G	Hetero	INTERGENIC
SBS	Chr1	40004776	G-A	Homo	INTERGENIC
SBS	Chr1	42734340	C-T	Hetero	INTERGENIC
SBS	Chr2	21225240	G-T	Homo	INTERGENIC
SBS	Chr2	25432896	C-T	Homo	INTERGENIC
SBS	Chr2	27228722	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g273600
SBS	Chr3	20522902	C-T	Homo	INTERGENIC
SBS	Chr3	27080709	G-T	Hetero	INTERGENIC
SBS	Chr3	29785471	T-C	Hetero	INTERGENIC
SBS	Chr3	33773992	C-G	Hetero	INTERGENIC
SBS	Chr4	3666477	G-A	Hetero	INTERGENIC
SBS	Chr4	7310604	A-T	Hetero	INTERGENIC
SBS	Chr4	16770868	C-T	Hetero	INTERGENIC
SBS	Chr5	12300266	C-A	Hetero	INTERGENIC
SBS	Chr5	13608183	T-C	Hetero	INTERGENIC
SBS	Chr5	22218537	C-A	Homo	INTERGENIC
SBS	Chr6	9244163	T-A	Hetero	INTERGENIC
SBS	Chr6	9371968	T-G	Hetero	INTERGENIC
SBS	Chr6	11747737	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g128100
SBS	Chr6	14272314	G-C	Hetero	INTERGENIC
SBS	Chr6	18080575	G-T	Hetero	INTERGENIC
SBS	Chr6	29868746	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr7	29126138	C-A	Hetero	INTERGENIC
SBS	Chr8	18374295	G-A	Homo	INTERGENIC
SBS	Chr8	26206484	C-T	Hetero	INTERGENIC
SBS	Chr8	26206485	C-T	Hetero	INTERGENIC
SBS	Chr8	27444400	A-C	Hetero	INTERGENIC
SBS	Chr9	3552978	A-G	Hetero	INTERGENIC
SBS	Chr9	13911795	C-T	Hetero	INTERGENIC
SBS	Chr9	17862977	G-A	Hetero	INTRON
SBS	Chr9	21916034	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr9	22217596	A-T	Hetero	INTRON
SBS	Chr9	22376041	C-T	Hetero	INTERGENIC
SBS	Chr10	8615629	A-C	Homo	INTERGENIC
SBS	Chr10	20308670	T-C	Homo	INTERGENIC
SBS	Chr11	7903547	T-A	Homo	INTRON
SBS	Chr11	7903549	C-A	Homo	INTRON
SBS	Chr11	10728231	C-A	Homo	INTERGENIC
SBS	Chr11	11167776	C-T	Homo	INTERGENIC
SBS	Chr11	29449177	G-A	Hetero	INTERGENIC
SBS	Chr12	19766099	C-T	Hetero	INTERGENIC
SBS	Chr12	26991994	C-T	Hetero	INTERGENIC
SBS	Chr12	26991995	C-G	Hetero	INTERGENIC
SBS	Chr12	26991996	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	4112994	4112999	5
Deletion	Chr10	7452001	7476000	23999
Deletion	Chr11	8406365	8406366	1
Deletion	Chr9	10677084	10677086	2
Deletion	Chr8	10683908	10683912	4
Deletion	Chr9	10836001	10866000	29999	2
Deletion	Chr3	11534159	11534160	1
Deletion	Chr8	18061825	18061828	3
Deletion	Chr8	19939106	19939107	1
Deletion	Chr6	21836961	21836962	1
Deletion	Chr4	25318834	25318837	3	OsKitaake04g172200

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	128319	617610	2
Inversion	Chr4	128325	617613	2

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes