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Mutant Information

Mutant Name	FN1586-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1586-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20143090 T-G Homo INTERGENIC
SBS Chr1 35060640 A-T Homo INTERGENIC
SBS Chr2 18765025 T-C Homo INTERGENIC
SBS Chr2 24098149 A-T Hetero INTERGENIC
SBS Chr2 24098153 C-T Hetero INTERGENIC
SBS Chr3 28730833 T-C Homo INTERGENIC
SBS Chr3 35978938 C-G Homo INTERGENIC
SBS Chr4 11160690 G-A Hetero INTERGENIC
SBS Chr4 13821518 G-A Homo INTRON
SBS Chr4 14104473 C-T Homo INTERGENIC
SBS Chr4 16087362 G-A Hetero INTERGENIC
SBS Chr4 22701251 A-T Hetero INTERGENIC
SBS Chr4 29082899 A-T Homo INTRON
SBS Chr6 4039643 C-T Hetero INTRON
SBS Chr6 10025776 C-T Homo INTERGENIC
SBS Chr7 576791 C-G Hetero UTR_5_PRIME
SBS Chr7 7053256 T-C Hetero INTERGENIC
SBS Chr8 1314893 A-T Hetero INTERGENIC
SBS Chr8 9910916 T-C Hetero INTERGENIC
SBS Chr8 13375470 A-T Hetero INTRON
SBS Chr8 15573164 G-A Hetero INTERGENIC
SBS Chr8 23700853 C-T Homo INTERGENIC
SBS Chr9 14441861 G-A Homo INTERGENIC
SBS Chr10 299637 G-A Hetero INTERGENIC
SBS Chr10 3998517 G-A Hetero INTERGENIC
SBS Chr11 313107 T-A Hetero INTRON
SBS Chr11 407507 C-T Hetero INTERGENIC
SBS Chr11 24173631 C-T Hetero INTERGENIC
SBS Chr12 2009707 G-A Homo NON_SYNONYMOUS_CODING OsKitaake12g031500
SBS Chr12 17125368 G-A Hetero INTERGENIC
SBS Chr12 24939654 A-T Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 6660088 6660093 5
Deletion Chr7 8286549 8286553 4
Deletion Chr12 13059669 13059670 1
Deletion Chr2 13802819 13802821 2
Deletion Chr1 14547954 14547959 5
Deletion Chr12 23070939 23070941 2
Deletion Chr2 25009685 25009767 82
Deletion Chr2 28453480 28453482 2
Deletion Chr1 30666725 30666726 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 20986877 20986880 2
Insertion Chr3 16743903 16743905 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 286404 289329 OsKitaake01g004000
Inversion Chr1 286411 289346 OsKitaake01g004000

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 4707289 Chr3 32591194
Translocation Chr5 4707568 Chr3 32591193

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20143090	T-G	Homo	INTERGENIC
SBS	Chr1	35060640	A-T	Homo	INTERGENIC
SBS	Chr2	18765025	T-C	Homo	INTERGENIC
SBS	Chr2	24098149	A-T	Hetero	INTERGENIC
SBS	Chr2	24098153	C-T	Hetero	INTERGENIC
SBS	Chr3	28730833	T-C	Homo	INTERGENIC
SBS	Chr3	35978938	C-G	Homo	INTERGENIC
SBS	Chr4	11160690	G-A	Hetero	INTERGENIC
SBS	Chr4	13821518	G-A	Homo	INTRON
SBS	Chr4	14104473	C-T	Homo	INTERGENIC
SBS	Chr4	16087362	G-A	Hetero	INTERGENIC
SBS	Chr4	22701251	A-T	Hetero	INTERGENIC
SBS	Chr4	29082899	A-T	Homo	INTRON
SBS	Chr6	4039643	C-T	Hetero	INTRON
SBS	Chr6	10025776	C-T	Homo	INTERGENIC
SBS	Chr7	576791	C-G	Hetero	UTR_5_PRIME
SBS	Chr7	7053256	T-C	Hetero	INTERGENIC
SBS	Chr8	1314893	A-T	Hetero	INTERGENIC
SBS	Chr8	9910916	T-C	Hetero	INTERGENIC
SBS	Chr8	13375470	A-T	Hetero	INTRON
SBS	Chr8	15573164	G-A	Hetero	INTERGENIC
SBS	Chr8	23700853	C-T	Homo	INTERGENIC
SBS	Chr9	14441861	G-A	Homo	INTERGENIC
SBS	Chr10	299637	G-A	Hetero	INTERGENIC
SBS	Chr10	3998517	G-A	Hetero	INTERGENIC
SBS	Chr11	313107	T-A	Hetero	INTRON
SBS	Chr11	407507	C-T	Hetero	INTERGENIC
SBS	Chr11	24173631	C-T	Hetero	INTERGENIC
SBS	Chr12	2009707	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g031500
SBS	Chr12	17125368	G-A	Hetero	INTERGENIC
SBS	Chr12	24939654	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	6660088	6660093	5
Deletion	Chr7	8286549	8286553	4
Deletion	Chr12	13059669	13059670	1
Deletion	Chr2	13802819	13802821	2
Deletion	Chr1	14547954	14547959	5
Deletion	Chr12	23070939	23070941	2
Deletion	Chr2	25009685	25009767	82
Deletion	Chr2	28453480	28453482	2
Deletion	Chr1	30666725	30666726	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	286404	289329	OsKitaake01g004000
Inversion	Chr1	286411	289346	OsKitaake01g004000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes