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| Mutant Information |
|---|
| Mutant Name | FN1590-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1590-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 18
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 31753422 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 17783452 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 22754824 | T-G | Homo | INTERGENIC | |
| SBS | Chr3 | 18803058 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 35222302 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr4 | 31698678 | G-C | Hetero | INTRON | |
| SBS | Chr5 | 18356908 | A-G | Hetero | UTR_5_PRIME | |
| SBS | Chr6 | 16965949 | T-A | Homo | INTRON | |
| SBS | Chr8 | 19871069 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 22318371 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 15072536 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 9523957 | G-C | Homo | INTERGENIC | |
| SBS | Chr11 | 20771834 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 20771835 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 11307894 | G-C | Homo | INTERGENIC | |
| SBS | Chr12 | 18858113 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 22215862 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 24609168 | T-C | Hetero | INTRON |
Deletions: 21
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 366474 | 366480 | 6 | OsKitaake11g003400 |
| Deletion | Chr2 | 1418174 | 1418175 | 1 | OsKitaake02g021800 |
| Deletion | Chr4 | 2405314 | 2405316 | 2 | |
| Deletion | Chr2 | 2481907 | 2481910 | 3 | |
| Deletion | Chr9 | 2942145 | 2942146 | 1 | |
| Deletion | Chr8 | 3338001 | 3403000 | 64999 | 5 |
| Deletion | Chr12 | 7327968 | 7327969 | 1 | OsKitaake12g080800 |
| Deletion | Chr8 | 7447863 | 7447864 | 1 | |
| Deletion | Chr12 | 12590001 | 12614000 | 23999 | 5 |
| Deletion | Chr2 | 16283309 | 16283311 | 2 | |
| Deletion | Chr3 | 16778731 | 16778732 | 1 | |
| Deletion | Chr7 | 18701633 | 18701636 | 3 | |
| Deletion | Chr4 | 20167986 | 20168000 | 14 | OsKitaake04g106600 |
| Deletion | Chr6 | 21157963 | 21157976 | 13 | |
| Deletion | Chr7 | 21174827 | 21174833 | 6 | |
| Deletion | Chr8 | 23059767 | 23059770 | 3 | |
| Deletion | Chr8 | 24947335 | 24947351 | 16 | |
| Deletion | Chr2 | 27834126 | 27834130 | 4 | |
| Deletion | Chr4 | 28166370 | 28166374 | 4 | |
| Deletion | Chr7 | 29675528 | 29675530 | 2 | |
| Deletion | Chr1 | 33641001 | 33691000 | 49999 | 10 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 21483814 | 21483816 | 1 | OsKitaake04g120700  |
| Insertion | Chr11 | 7413998 | 7414003 | 4 | |
| Insertion | Chr1 | 43966419 | 43966424 | 4 | |
| Insertion | Chr5 | 21767326 | 21767332 | 5 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 39204761 | 39681225 | |
| Inversion | Chr1 | 39204791 | 39681236 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 6315345 | Chr1 | 33638365 | OsKitaake01g344700 |
| Translocation | Chr12 | 6319687 | Chr3 | 8025002 | OsKitaake12g073000 |